sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1VQ6-01122-01121
X
>3R8O-A452-A451
X
>3U5D-1671-1670
X
>3KNI-B84-B83
X
>3F1H-A328-A327
X
>3F1F-A328-A327
X
</seq>
<hsp>
0 1:0.283291451238
0 2:0.868998183082
0 3:0.325680227866
0 4:0.280064497684
0 5:0.282688125037
1 2:0.987147030555
1 3:0.523575516656
1 4:0.101851372197
1 5:0.101785544318
2 3:0.625579436631
2 4:0.996287400033
2 5:1.0
3 4:0.500504241869
3 5:0.503821728335
4 5:0.00598558358136
</hsp>