sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3DIL-A42-A41
X
>3DIO-X42-X41
X
>3DIY-A42-A41
X
>3DIQ-A42-A41
X
>3DJ2-A42-A41
X
>3DIM-A42-A41
X
>3DIR-A42-A41
X
>3D0U-A39-A38
X
>3DIG-X42-X41
X
>3DJ0-A42-A41
X
>3DIZ-A42-A41
X
</seq>
<hsp>
0 1:0.343696211057
0 2:0.43647498361
0 3:0.359667380088
0 4:0.714103032918
0 5:0.581246779224
0 6:0.648955981696
0 7:0.485624139154
0 8:0.577706019281
0 9:0.370189228813
0 10:0.452446659007
1 2:0.634253325429
1 3:0.362873893723
1 4:0.954923054166
1 5:0.538064260143
1 6:0.654864661044
1 7:0.493484927035
1 8:0.574631964394
1 9:0.286118913
1 10:0.38623147546
2 3:0.579817255773
2 4:0.615651942054
2 5:0.709649539301
2 6:0.803517169104
2 7:0.595396715993
2 8:0.59608691359
2 9:0.613074431325
2 10:0.700228736019
3 4:0.958184176734
3 5:0.686778713477
3 6:0.752509253179
3 7:0.513478996869
3 8:0.743004523507
3 9:0.456039842246
3 10:0.517400174022
4 5:0.752869460921
4 6:0.999997274617
4 7:0.719228643834
4 8:0.822695917796
4 9:0.810332119759
4 10:0.891319032396
5 6:0.570299722133
5 7:0.537319980152
5 8:0.428756213147
5 9:0.298584664101
5 10:0.313873779332
6 7:0.762172680303
6 8:0.379374809731
6 9:0.48452901663
6 10:0.383189591225
7 8:0.662612548636
7 9:0.404771813358
7 10:0.564478202707
8 9:0.414906375587
8 10:0.4121908124
9 10:0.187362034079
</hsp>