sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X464-X463
X
>2J01-A2540-A2539
X
>2J03-A2540-A2539
X
>3F1H-A553-A552
X
>3R8T-A532-A531
X
>2J03-A546-A545
X
>3OI1-A546-A545
X
>3OHK-A546-A545
X
>3KNK-A546-A545
X
>3OH5-A546-A545
X
</seq>
<hsp>
0 1:0.93183339359
0 2:0.933216038512
0 3:0.868409722424
0 4:0.890333238216
0 5:0.875361369443
0 6:0.900703287934
0 7:0.877208140562
0 8:0.864498174337
0 9:0.886479783205
1 2:0.00678691383486
1 3:0.914118708299
1 4:0.898519393836
1 5:0.94345378366
1 6:0.998346964219
1 7:0.926356700158
1 8:0.911882555403
1 9:0.938960859438
2 3:0.915400715072
2 4:0.899245718023
2 5:0.945301810585
2 6:1.0
2 7:0.927611968418
2 8:0.913355614702
2 9:0.940162981484
3 4:0.143177757731
3 5:0.124882161378
3 6:0.129886138614
3 7:0.0526318845549
3 8:0.0705961897497
3 9:0.0865726802351
4 5:0.19090496909
4 6:0.203362902741
4 7:0.119314202422
4 8:0.159640836522
4 9:0.108675267063
5 6:0.105179784793
5 7:0.12065482336
5 8:0.101233061615
5 9:0.124401162738
6 7:0.105467239173
6 8:0.133449678031
6 9:0.1047435441
7 8:0.0808046568075
7 9:0.0388093327265
8 9:0.100220603374
</hsp>