sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A789-A788
X
>3R8N-X1-X0
X
>3U5D-11170-11169
X
>3KNI-A1573-A1572
X
>3U5F-6159-6158
X
>3CCJ-0725-0724
X
>3R8N-A1154-A1153
X
>3F1G-A289-A288
X
>3F1E-A289-A288
X
</seq>
<hsp>
0 1:0.64495526864
0 2:0.219982013649
0 3:0.346784193163
0 4:0.260364562905
0 5:0.302194811516
0 6:0.43503584594
0 7:0.360997662464
0 8:0.361831799132
1 2:0.803236768751
1 3:0.691633346177
1 4:0.755830667644
1 5:0.648669462204
1 6:0.999997628291
1 7:0.883416168547
1 8:0.878822702259
2 3:0.491717649346
2 4:0.295859140654
2 5:0.407210139262
2 6:0.267972807169
2 7:0.275246174376
2 8:0.282834300942
3 4:0.301528000483
3 5:0.24084761423
3 6:0.593127533999
3 7:0.426582549143
3 8:0.420161473531
4 5:0.203630097087
4 6:0.428107061577
4 7:0.24946838732
4 8:0.252575669543
5 6:0.539056922191
5 7:0.330009879767
5 8:0.326307544671
6 7:0.259979987194
6 8:0.266456853683
7 8:0.0156068304416
</hsp>