sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3KNI-A205-A204
X
>3U5H-51013-51012
X
>3F1H-A2767-A2766
X
>3F1F-A2767-A2766
X
>2ZJR-X2570-X2569
X
>3OHK-A2613-A2612
X
>3OHJ-A2613-A2612
X
>3OH5-A2613-A2612
X
>3OH7-A2613-A2612
X
</seq>
<hsp>
0 1:1.0
0 2:0.543222899367
0 3:0.550591298707
0 4:0.438494374501
0 5:0.37361433404
0 6:0.331947243085
0 7:0.325934467075
0 8:0.327921358396
1 2:0.826588059346
1 3:0.827687559122
1 4:0.753289931354
1 5:0.899883072954
1 6:0.898949011759
1 7:0.838267918956
1 8:0.851440755205
2 3:0.0178524838416
2 4:0.372383805523
2 5:0.56671978094
2 6:0.554244132224
2 7:0.554626274555
2 8:0.584609858956
3 4:0.37379331268
3 5:0.574703229189
3 6:0.562146575833
3 7:0.563869929491
3 8:0.593961362574
4 5:0.504567502868
4 6:0.478341368599
4 7:0.404769128919
4 8:0.437251276267
5 6:0.0646466285737
5 7:0.198899718245
5 8:0.192464884406
6 7:0.168753003845
6 8:0.174298854842
7 8:0.0694987061549
</hsp>