ClaRNA

Doublet Group distance statistics: 50221

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 2, 2, 0, 0, 0, 0, 1, 0, 0, 1, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
C6 A 0, 0.002, 0.007, 0.012, 0.015 max_d=0.015 avg_d=0.007 std_dev=0.005
C5 A 0, 0.006, 0.012, 0.018, 0.019 max_d=0.019 avg_d=0.012 std_dev=0.006
C4 A 0, 0.006, 0.014, 0.022, 0.025 max_d=0.025 avg_d=0.014 std_dev=0.008
N1 A 0, 0.008, 0.017, 0.025, 0.029 max_d=0.029 avg_d=0.017 std_dev=0.008
N9 A 0, 0.006, 0.015, 0.024, 0.030 max_d=0.030 avg_d=0.015 std_dev=0.009
N3 A 0, 0.009, 0.018, 0.028, 0.032 max_d=0.032 avg_d=0.018 std_dev=0.010
C1' A 0, 0.005, 0.016, 0.026, 0.032 max_d=0.032 avg_d=0.016 std_dev=0.010
C2 A 0, 0.005, 0.016, 0.028, 0.037 max_d=0.037 avg_d=0.016 std_dev=0.011
N7 A 0, 0.011, 0.023, 0.035, 0.037 max_d=0.037 avg_d=0.023 std_dev=0.012
O6 A 0, 0.010, 0.025, 0.040, 0.041 max_d=0.041 avg_d=0.025 std_dev=0.015
C8 A 0, 0.011, 0.027, 0.043, 0.044 max_d=0.044 avg_d=0.027 std_dev=0.016
N2 A 0, 0.004, 0.027, 0.050, 0.067 max_d=0.067 avg_d=0.027 std_dev=0.023
O4' A 0, -0.007, 0.099, 0.205, 0.335 max_d=0.335 avg_d=0.099 std_dev=0.106
C2' A 0, -0.012, 0.109, 0.230, 0.390 max_d=0.390 avg_d=0.109 std_dev=0.121
O2' A 0, -0.011, 0.139, 0.289, 0.482 max_d=0.482 avg_d=0.139 std_dev=0.150
C4' A 0, -0.022, 0.141, 0.304, 0.501 max_d=0.501 avg_d=0.141 std_dev=0.163
C3' A 0, -0.025, 0.165, 0.356, 0.598 max_d=0.598 avg_d=0.165 std_dev=0.191
C1' B 0, 0.191, 0.452, 0.713, 0.689 max_d=0.689 avg_d=0.452 std_dev=0.261
O3' A 0, -0.015, 0.253, 0.522, 0.797 max_d=0.797 avg_d=0.253 std_dev=0.268
C5' A 0, -0.027, 0.268, 0.564, 0.964 max_d=0.964 avg_d=0.268 std_dev=0.296
O2' B 0, 0.186, 0.589, 0.992, 1.264 max_d=1.264 avg_d=0.589 std_dev=0.403
C2' B 0, 0.133, 0.623, 1.113, 1.547 max_d=1.547 avg_d=0.623 std_dev=0.490
O3' B 0, -0.097, 0.647, 1.391, 2.300 max_d=2.300 avg_d=0.647 std_dev=0.744
O4' B 0, 0.047, 0.880, 1.713, 2.465 max_d=2.465 avg_d=0.880 std_dev=0.833
O5' A 0, -0.207, 0.658, 1.523, 2.308 max_d=2.308 avg_d=0.658 std_dev=0.865
P A 0, -0.132, 0.752, 1.637, 2.500 max_d=2.500 avg_d=0.752 std_dev=0.885
C3' B 0, -0.124, 0.784, 1.692, 2.564 max_d=2.564 avg_d=0.784 std_dev=0.908
N9 B 0, -0.003, 0.919, 1.842, 2.747 max_d=2.747 avg_d=0.919 std_dev=0.923
OP2 A 0, -0.091, 0.938, 1.968, 3.013 max_d=3.013 avg_d=0.938 std_dev=1.029
OP1 A 0, -0.263, 1.091, 2.444, 4.206 max_d=4.206 avg_d=1.091 std_dev=1.354
C4' B 0, -0.373, 1.072, 2.518, 3.598 max_d=3.598 avg_d=1.072 std_dev=1.446
C4 B 0, -0.227, 1.238, 2.704, 3.922 max_d=3.922 avg_d=1.238 std_dev=1.466
N3 B 0, -0.208, 1.279, 2.767, 4.093 max_d=4.093 avg_d=1.279 std_dev=1.488
C8 B 0, -0.348, 1.354, 3.056, 5.043 max_d=5.043 avg_d=1.354 std_dev=1.702
C2 B 0, -0.493, 1.740, 3.972, 5.857 max_d=5.857 avg_d=1.740 std_dev=2.233
C5 B 0, -0.617, 1.739, 4.096, 6.220 max_d=6.220 avg_d=1.739 std_dev=2.356
C5' B 0, -0.753, 1.659, 4.071, 5.995 max_d=5.995 avg_d=1.659 std_dev=2.412
O5' B 0, -0.632, 1.884, 4.399, 6.751 max_d=6.751 avg_d=1.884 std_dev=2.515
N7 B 0, -0.700, 1.820, 4.339, 7.004 max_d=7.004 avg_d=1.820 std_dev=2.519
N1 B 0, -0.800, 2.130, 5.061, 7.399 max_d=7.399 avg_d=2.130 std_dev=2.931
C6 B 0, -0.903, 2.164, 5.232, 7.820 max_d=7.820 avg_d=2.164 std_dev=3.068
P B 0, -1.289, 2.421, 6.131, 9.636 max_d=9.636 avg_d=2.421 std_dev=3.710
N6 B 0, -1.302, 2.682, 6.666, 10.163 max_d=10.163 avg_d=2.682 std_dev=3.984
OP1 B 0, -1.364, 2.704, 6.772, 10.221 max_d=10.221 avg_d=2.704 std_dev=4.068
OP2 B 0, -1.369, 2.829, 7.027, 11.453 max_d=11.453 avg_d=2.829 std_dev=4.198

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N2N3N7N9O2'O3'O4'O5'O6OP1OP2P
C1' 0.00 0.03 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.04 0.03 0.01 0.01 0.01 0.01 0.01 0.29 0.01 0.04 0.28 0.09
C2 0.03 0.00 0.09 0.12 0.01 0.06 0.01 0.06 0.01 0.02 0.00 0.00 0.00 0.02 0.01 0.06 0.15 0.03 0.61 0.01 0.35 0.72 0.39
C2' 0.00 0.09 0.00 0.00 0.04 0.01 0.02 0.01 0.03 0.05 0.06 0.11 0.09 0.04 0.01 0.00 0.01 0.00 0.32 0.03 0.20 0.32 0.15
C3' 0.00 0.12 0.00 0.00 0.06 0.00 0.04 0.01 0.06 0.08 0.09 0.14 0.11 0.06 0.03 0.01 0.00 0.01 0.37 0.05 0.41 0.31 0.25
C4 0.01 0.01 0.04 0.06 0.00 0.04 0.00 0.05 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.02 0.07 0.01 0.61 0.01 0.33 0.66 0.38
C4' 0.01 0.06 0.01 0.00 0.04 0.00 0.03 0.00 0.04 0.03 0.05 0.07 0.05 0.03 0.02 0.01 0.01 0.00 0.01 0.05 0.12 0.09 0.09
C5 0.01 0.01 0.02 0.04 0.00 0.03 0.00 0.06 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.02 0.06 0.01 0.73 0.01 0.49 0.81 0.52
C5' 0.01 0.06 0.01 0.01 0.05 0.00 0.06 0.00 0.07 0.06 0.07 0.07 0.06 0.06 0.04 0.01 0.02 0.01 0.00 0.08 0.34 0.25 0.01
C6 0.01 0.01 0.03 0.06 0.01 0.04 0.01 0.07 0.00 0.02 0.00 0.01 0.01 0.02 0.01 0.03 0.08 0.01 0.75 0.00 0.55 0.87 0.56
C8 0.01 0.02 0.05 0.08 0.01 0.03 0.01 0.06 0.02 0.00 0.02 0.02 0.01 0.00 0.00 0.03 0.09 0.03 0.71 0.03 0.42 0.67 0.46
N1 0.02 0.00 0.06 0.09 0.01 0.05 0.01 0.07 0.00 0.02 0.00 0.01 0.01 0.02 0.01 0.05 0.12 0.01 0.69 0.01 0.47 0.82 0.49
N2 0.04 0.00 0.11 0.14 0.01 0.07 0.01 0.07 0.01 0.02 0.01 0.00 0.01 0.02 0.02 0.08 0.18 0.04 0.56 0.02 0.31 0.69 0.36
N3 0.03 0.00 0.09 0.11 0.00 0.05 0.01 0.06 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.05 0.13 0.03 0.54 0.01 0.26 0.62 0.32
N7 0.01 0.02 0.04 0.06 0.01 0.03 0.01 0.06 0.02 0.00 0.02 0.02 0.01 0.00 0.00 0.03 0.08 0.03 0.78 0.03 0.56 0.85 0.58
N9 0.01 0.01 0.01 0.03 0.00 0.02 0.00 0.04 0.01 0.00 0.01 0.02 0.01 0.00 0.00 0.01 0.03 0.01 0.56 0.02 0.26 0.54 0.30
O2' 0.01 0.06 0.00 0.01 0.02 0.01 0.02 0.01 0.03 0.03 0.05 0.08 0.05 0.03 0.01 0.00 0.02 0.02 0.07 0.03 0.10 0.14 0.08
O3' 0.01 0.15 0.01 0.00 0.07 0.01 0.06 0.02 0.08 0.09 0.12 0.18 0.13 0.08 0.03 0.02 0.00 0.01 0.23 0.08 0.45 0.32 0.23
O4' 0.01 0.03 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.03 0.01 0.04 0.03 0.03 0.01 0.02 0.01 0.00 0.11 0.03 0.13 0.18 0.16
O5' 0.29 0.61 0.32 0.37 0.61 0.01 0.73 0.00 0.75 0.71 0.69 0.56 0.54 0.78 0.56 0.07 0.23 0.11 0.00 0.79 0.01 0.03 0.00
O6 0.01 0.01 0.03 0.05 0.01 0.05 0.01 0.08 0.00 0.03 0.01 0.02 0.01 0.03 0.02 0.03 0.08 0.03 0.79 0.00 0.63 0.93 0.62
OP1 0.04 0.35 0.20 0.41 0.33 0.12 0.49 0.34 0.55 0.42 0.47 0.31 0.26 0.56 0.26 0.10 0.45 0.13 0.01 0.63 0.00 0.01 0.01
OP2 0.28 0.72 0.32 0.31 0.66 0.09 0.81 0.25 0.87 0.67 0.82 0.69 0.62 0.85 0.54 0.14 0.32 0.18 0.03 0.93 0.01 0.00 0.00
P 0.09 0.39 0.15 0.25 0.38 0.09 0.52 0.01 0.56 0.46 0.49 0.36 0.32 0.58 0.30 0.08 0.23 0.16 0.00 0.62 0.01 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.08 1.77 0.34 0.29 1.20 1.15 1.52 1.38 1.93 0.80 2.03 1.33 2.11 1.28 0.66 0.30 0.45 0.70 1.18 1.64 1.38 1.39
C2 0.10 1.93 0.34 0.10 1.08 0.85 1.50 0.83 2.06 0.90 2.29 1.30 2.43 1.41 0.58 0.23 0.19 0.71 0.91 1.93 1.23 1.25
C2' 0.14 1.80 0.41 0.23 1.19 1.05 1.50 1.34 1.95 0.76 2.07 1.34 2.17 1.24 0.66 0.41 0.33 0.64 1.10 1.71 1.42 1.39
C3' 0.28 1.68 0.57 0.07 1.09 0.75 1.23 0.93 1.60 0.55 1.80 1.33 1.71 0.91 0.61 0.56 0.19 0.41 0.61 1.07 0.82 0.80
C4 0.09 1.90 0.37 0.11 1.02 0.82 1.29 0.73 1.77 0.81 2.08 1.34 1.94 1.20 0.51 0.24 0.20 0.67 0.72 1.43 0.97 0.94
C4' 0.31 1.51 0.52 0.23 1.06 0.78 1.17 1.00 1.47 0.52 1.62 1.23 1.55 0.86 0.63 0.52 0.40 0.37 0.65 0.91 0.88 0.81
C5 0.13 1.72 0.38 0.29 0.71 0.53 0.82 0.20 1.21 0.75 1.67 1.22 1.27 0.91 0.32 0.20 0.12 0.57 0.33 0.93 1.06 0.64
C5' 0.45 1.29 0.71 0.06 0.87 0.32 0.79 0.42 1.02 0.22 1.25 1.13 0.97 0.42 0.51 0.69 0.24 0.13 0.20 0.39 0.18 0.21
C6 0.17 1.65 0.36 0.33 0.63 0.46 0.75 0.12 1.14 0.76 1.60 1.14 1.25 0.92 0.29 0.17 0.14 0.56 0.30 0.96 1.25 0.68
C8 0.10 1.54 0.44 0.27 0.69 0.52 0.66 0.23 0.99 0.63 1.40 1.21 0.95 0.65 0.26 0.24 0.11 0.50 0.36 0.72 0.76 0.55
N1 0.14 1.77 0.34 0.22 0.84 0.65 1.13 0.43 1.60 0.81 1.94 1.19 1.86 1.15 0.42 0.19 0.14 0.64 0.51 1.39 1.09 0.80
N2 0.09 1.95 0.32 0.08 1.17 0.93 1.68 1.00 2.30 0.98 2.44 1.30 2.79 1.57 0.65 0.24 0.22 0.74 1.12 2.31 1.48 1.55
N3 0.08 2.00 0.35 0.08 1.19 0.96 1.62 1.03 2.19 0.93 2.39 1.37 2.52 1.48 0.64 0.25 0.25 0.73 1.08 2.02 1.33 1.41
N7 0.14 1.51 0.41 0.42 0.50 0.30 0.40 0.23 0.72 0.74 1.27 1.15 0.65 0.69 0.20 0.20 0.14 0.45 0.56 0.86 1.26 0.86
N9 0.07 1.79 0.39 0.06 1.02 0.88 1.22 0.83 1.63 0.73 1.90 1.33 1.73 1.06 0.51 0.27 0.26 0.64 0.72 1.23 0.86 0.88
O2' 0.09 1.80 0.27 0.47 1.26 1.27 1.70 1.76 2.19 0.88 2.20 1.30 2.52 1.47 0.73 0.35 0.49 0.76 1.53 2.23 2.12 1.96
O3' 0.31 1.67 0.56 0.11 1.09 0.73 1.24 0.99 1.63 0.54 1.82 1.31 1.77 0.92 0.62 0.60 0.17 0.39 0.64 1.12 0.93 0.86
O4' 0.20 1.57 0.41 0.34 1.14 1.02 1.32 1.21 1.62 0.65 1.72 1.26 1.70 1.04 0.67 0.36 0.54 0.53 0.90 1.11 1.07 1.03
O5' 0.38 1.36 0.51 0.14 0.83 0.13 0.69 0.12 0.96 0.16 1.25 1.20 0.88 0.31 0.41 0.42 0.02 0.19 0.50 0.78 0.40 0.53
O6 0.21 1.44 0.34 0.44 0.40 0.27 0.40 0.32 0.69 0.79 1.26 1.02 0.72 0.82 0.24 0.16 0.20 0.48 0.50 0.91 1.62 0.94
OP1 0.51 0.78 0.57 0.29 0.60 0.02 0.58 0.32 0.59 0.72 0.69 0.74 0.56 0.67 0.59 0.81 0.02 0.21 0.56 1.14 0.65 0.71
OP2 0.25 0.60 0.07 0.33 0.16 0.51 0.48 1.05 0.26 1.13 0.35 0.48 0.43 1.04 0.51 0.40 0.01 0.39 1.47 1.96 1.68 1.71
P 0.18 0.77 0.22 0.02 0.31 0.14 0.24 0.45 0.29 0.68 0.58 0.68 0.23 0.56 0.28 0.42 0.01 0.05 0.82 1.21 0.89 0.94

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6C8N1N3N6N7N9O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.09 0.01 0.00 0.06 0.02 0.04 0.08 0.06 0.01 0.08 0.09 0.05 0.01 0.02 0.01 0.26 0.02 0.30 0.13 0.23 0.22
C2 0.09 0.00 0.26 0.77 0.00 0.57 0.01 0.89 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.18 0.64 0.26 0.56 0.61 0.54 0.41
C2' 0.01 0.26 0.00 0.01 0.15 0.02 0.11 0.15 0.16 0.12 0.22 0.24 0.15 0.08 0.03 0.00 0.01 0.01 0.14 0.28 0.05 0.04
C3' 0.00 0.77 0.01 0.00 0.39 0.01 0.26 0.02 0.41 0.36 0.62 0.72 0.35 0.25 0.11 0.02 0.01 0.02 0.35 0.52 0.24 0.32
C4 0.06 0.00 0.15 0.39 0.00 0.25 0.01 0.45 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.31 0.30 0.13 0.25 0.29 0.74 0.34
C4' 0.02 0.57 0.02 0.01 0.25 0.00 0.11 0.00 0.22 0.31 0.42 0.55 0.15 0.21 0.05 0.28 0.01 0.00 0.01 0.35 0.19 0.11
C5 0.04 0.01 0.11 0.26 0.01 0.11 0.00 0.42 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.47 0.38 0.06 0.55 0.53 1.28 0.77
C5' 0.08 0.89 0.15 0.02 0.45 0.00 0.42 0.00 0.54 0.52 0.74 0.81 0.53 0.50 0.21 0.12 0.19 0.01 0.00 0.33 0.36 0.01
C6 0.06 0.01 0.16 0.41 0.01 0.22 0.00 0.54 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.43 0.31 0.11 0.46 0.44 1.26 0.66
C8 0.01 0.01 0.12 0.36 0.00 0.31 0.00 0.52 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.59 0.86 0.15 1.02 0.92 1.48 1.15
N1 0.08 0.00 0.22 0.62 0.01 0.42 0.01 0.74 0.00 0.01 0.00 0.01 0.00 0.01 0.02 0.30 0.46 0.20 0.41 0.40 0.87 0.38
N3 0.09 0.00 0.24 0.72 0.00 0.55 0.01 0.81 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.13 0.58 0.26 0.47 0.58 0.37 0.34
N6 0.05 0.00 0.15 0.35 0.01 0.15 0.00 0.53 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.50 0.34 0.08 0.62 0.66 1.60 0.92
N7 0.01 0.01 0.08 0.25 0.00 0.21 0.00 0.50 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.61 0.73 0.10 0.98 0.99 1.75 1.24
N9 0.02 0.01 0.03 0.11 0.01 0.05 0.01 0.21 0.01 0.00 0.02 0.01 0.01 0.01 0.00 0.37 0.45 0.02 0.47 0.37 0.79 0.54
O2' 0.01 0.18 0.00 0.02 0.31 0.28 0.47 0.12 0.43 0.59 0.30 0.13 0.50 0.61 0.37 0.00 0.04 0.19 0.28 0.64 0.45 0.35
O3' 0.26 0.64 0.01 0.01 0.30 0.01 0.38 0.19 0.31 0.86 0.46 0.58 0.34 0.73 0.45 0.04 0.00 0.19 0.58 0.77 0.81 0.68
O4' 0.02 0.26 0.01 0.02 0.13 0.00 0.06 0.01 0.11 0.15 0.20 0.26 0.08 0.10 0.02 0.19 0.19 0.00 0.34 0.17 0.19 0.21
O5' 0.30 0.56 0.14 0.35 0.25 0.01 0.55 0.00 0.46 1.02 0.41 0.47 0.62 0.98 0.47 0.28 0.58 0.34 0.00 0.01 0.02 0.00
OP1 0.13 0.61 0.28 0.52 0.29 0.35 0.53 0.33 0.44 0.92 0.40 0.58 0.66 0.99 0.37 0.64 0.77 0.17 0.01 0.00 0.01 0.00
OP2 0.23 0.54 0.05 0.24 0.74 0.19 1.28 0.36 1.26 1.48 0.87 0.37 1.60 1.75 0.79 0.45 0.81 0.19 0.02 0.01 0.00 0.00
P 0.22 0.41 0.04 0.32 0.34 0.11 0.77 0.01 0.66 1.15 0.38 0.34 0.92 1.24 0.54 0.35 0.68 0.21 0.00 0.00 0.00 0.00