sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A362-A361
X
>2ZJR-X971-X970
X
>3F1G-Z45-Z44
X
>3F1E-Z45-Z44
X
>1TTT-D23-D22
X
>3KNK-A2599-A2598
X
>3F1F-A2066-A2065
X
>3F1H-A2066-A2065
X
</seq>
<hsp>
0 1:0.855420793655
0 2:0.465844985819
0 3:0.460857429036
0 4:0.657105588849
0 5:0.825897559179
0 6:0.999996502265
0 7:0.995316008984
1 2:0.568183322023
1 3:0.572104410747
1 4:0.422324850279
1 5:0.161226867521
1 6:0.252654167303
1 7:0.247199865304
2 3:0.00846498398676
2 4:0.427934071848
2 5:0.598781495479
2 6:0.689990953539
2 7:0.683142676143
3 4:0.426833609628
3 5:0.601399123003
3 6:0.692956937233
3 7:0.686215240041
4 5:0.430332337704
4 6:0.47910900539
4 7:0.475457825725
5 6:0.250559306674
5 7:0.247320875404
6 7:0.0193282990768
</hsp>