sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1MDG-A3-A2
X
>2J03-A406-A405
X
>2J01-A406-A405
X
>3OHZ-A406-A405
X
>3OHK-A406-A405
X
>3OH7-A406-A405
X
>3OH5-A406-A405
X
</seq>
<hsp>
0 1:0.930412249007
0 2:0.919822442206
0 3:1.0
0 4:0.958564023515
0 5:0.959540341633
0 6:0.955068455626
1 2:0.015707519463
1 3:0.181137830621
1 4:0.18209547868
1 5:0.194362043917
1 6:0.191985797787
2 3:0.183297894788
2 4:0.181773835557
2 5:0.195374570895
2 6:0.192762433244
3 4:0.0948654164941
3 5:0.0992449721693
3 6:0.0919736303108
4 5:0.0585456343372
4 6:0.0629074750246
5 6:0.0201882801758
</hsp>