sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-51211-51181
X
>3R8T-A1048-A1047
X
>3F1G-A1008-A1007
X
>3R8N-A1455-A1454
X
>3R8N-A1253-A1252
X
>3OHJ-A942-A941
X
</seq>
<hsp>
0 1:0.991388288854
0 2:0.840130502977
0 3:0.942064070236
0 4:0.963337294694
0 5:0.999999991798
1 2:0.227726969954
1 3:0.130196803329
1 4:0.134689207699
1 5:0.0463910747577
2 3:0.152286113494
2 4:0.268882311628
2 5:0.237022479102
3 4:0.236882298767
3 5:0.152312758451
4 5:0.109852617914
</hsp>