sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-1496-1495
X
>3KFU-M49-M48
X
>3GX7-A70-A69
X
>3KNI-A1773-A1772
X
>3GX2-A70-A69
X
>3KNK-A1057-A1056
X
</seq>
<hsp>
0 1:0.162018649357
0 2:0.694554379389
0 3:0.401482947045
0 4:0.657791269281
0 5:0.936838661713
1 2:0.695245177474
1 3:0.271071344471
1 4:0.677242038716
1 5:0.893215011774
2 3:0.823979240109
2 4:0.316079043287
2 5:0.652839062402
3 4:0.839855117238
3 5:1.0
4 5:0.574054347255
</hsp>