sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12079-12055
X
>3R8N-V17-V16
X
>3OH5-A1845-A1821
X
>3OH7-A1845-A1821
X
>3OHZ-A1845-A1821
X
>3OHJ-A1845-A1821
X
>3OI1-A1845-A1821
X
>3OHK-A1845-A1821
X
>2J03-A1845-A1821
X
>2J01-A1845-A1821
X
</seq>
<hsp>
0 1:0.988832825818
0 2:0.180152150736
0 3:0.178241519972
0 4:0.236227896569
0 5:0.205274243223
0 6:0.230866615378
0 7:0.200998312213
0 8:0.179718460843
0 9:0.179473210366
1 2:0.988859655545
1 3:0.991457750136
1 4:0.971932282978
1 5:0.999689792885
1 6:0.968514430336
1 7:1.0
1 8:0.989398888712
1 9:0.989212708334
2 3:0.0187357170713
2 4:0.0724273614038
2 5:0.0633647734905
2 6:0.0699824346401
2 7:0.060676414036
2 8:0.0643000459768
2 9:0.0559710815371
3 4:0.0827703606093
3 5:0.0701125030536
3 6:0.0783078630182
3 7:0.0651863218163
3 8:0.0592263270429
3 9:0.0509719771932
4 5:0.103245858848
4 6:0.0162810335755
4 7:0.102120470727
4 8:0.11878332802
4 9:0.109815335408
5 6:0.104967045494
5 7:0.0158539747973
5 8:0.0609992479756
5 9:0.0600825555581
6 7:0.102156132898
6 8:0.115237342153
6 9:0.106062958335
7 8:0.0549791000876
7 9:0.0540332448252
8 9:0.0114773740123
</hsp>