sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-6567-6568
X
>3U5B-2570-2571
X
>3F1H-A2234-A2480
X
>3F1F-A2234-A2480
X
>2J03-A2127-A2373
X
>2J01-A2127-A2373
X
</seq>
<hsp>
0 1:0.0479930724951
0 2:1.0
0 3:0.999696024068
0 4:0.987882736458
0 5:0.990178359443
1 2:0.98496204212
1 3:0.984669778403
1 4:0.972773232217
1 5:0.975047279085
2 3:0.00645585428062
2 4:0.0478472914265
2 5:0.0490420332723
3 4:0.0466904544766
3 5:0.0476020251829
4 5:0.00512582418205
</hsp>