sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8O-A1125-A1124
X
>2UUA-A948-A1334
X
>1FJG-A948-A1334
X
>2J01-A2605-A2604
X
>3OH7-A2558-A2557
X
>1KXK-A28-A27
X
>3F1F-A2712-A2711
X
>3F1H-A2712-A2711
X
>2J00-A948-A1334
X
>2J02-A948-A1334
X
>3R8O-A624-A623
X
>3R8T-A1225-A1224
X
</seq>
<hsp>
0 1:0.88759215745
0 2:0.924929629878
0 3:0.517371105314
0 4:0.53150975297
0 5:0.621367354751
0 6:0.52340618727
0 7:0.524825261491
0 8:0.841558216562
0 9:0.843750909272
0 10:0.588205295825
0 11:0.646465109855
1 2:0.08839146213
1 3:0.91291743252
1 4:0.896321191371
1 5:0.461342810083
1 6:0.962791136131
1 7:0.957504831812
1 8:0.0714922143715
1 9:0.0699297664621
1 10:0.459036267482
1 11:0.367913306872
2 3:0.951479601446
2 4:0.933933739768
2 5:0.531838123953
2 6:0.999998385353
2 7:0.994414496579
2 8:0.13921655299
2 9:0.137689205553
2 10:0.527074262281
2 11:0.430376005972
3 4:0.0410794781723
3 5:0.70917346118
3 6:0.101386120177
3 7:0.0986982619132
3 8:0.880884734917
3 9:0.882637948473
3 10:0.701316430033
3 11:0.749550253508
4 5:0.703352933879
4 6:0.111583452557
4 7:0.10656345716
4 8:0.865412164317
4 9:0.867198111662
4 10:0.696428558491
4 11:0.740541168085
5 6:0.748088794006
5 7:0.745561255697
5 8:0.396598943671
5 9:0.398394998889
5 10:0.0566588062725
5 11:0.128435856975
6 7:0.00825422290236
6 8:0.929478157359
6 9:0.931254887267
6 10:0.739163862348
6 11:0.788950091759
7 8:0.924455808061
7 9:0.926233583641
7 10:0.73667573893
7 11:0.785572211907
8 9:0.00415567713575
8 10:0.394289929757
8 11:0.299915141803
9 10:0.396231418545
9 11:0.302022002136
10 11:0.113364049468
</hsp>