sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8T-A2721-A2720
X
>2J02-A85-A84
X
>2J00-A85-A84
X
>2UXC-A948-A1334
X
>3F1G-A948-A1334
X
>3F1E-A948-A1334
X
>3OI1-A2558-A2557
X
>3F1F-A868-A867
X
>3U5D-12853-12852
X
>3OHC-A85-A84
X
>3OHD-A85-A84
X
>3OI0-A85-A84
X
</seq>
<hsp>
0 1:0.211330018942
0 2:0.210675262417
0 3:0.203930132813
0 4:0.164216464184
0 5:0.167027427507
0 6:0.853107250239
0 7:0.757279710651
0 8:0.109348899256
0 9:0.172168619263
0 10:0.174014254338
0 11:0.180322201244
1 2:0.00221826478123
1 3:0.295602527743
1 4:0.203780220428
1 5:0.206739821895
1 6:0.858581597202
1 7:0.686747097041
1 8:0.227977256807
1 9:0.158390671785
1 10:0.159382740021
1 11:0.133784751171
2 3:0.294364324822
2 4:0.202591777076
2 5:0.2055358778
2 6:0.859240433302
2 7:0.687828318259
2 8:0.227882568375
2 9:0.157192046405
2 10:0.158179922662
2 11:0.132442399485
3 4:0.125141863922
3 5:0.125313545489
3 6:0.999997663777
3 7:0.855828552885
3 8:0.29811303027
3 9:0.186734485608
3 10:0.188214459985
3 11:0.234729068827
4 5:0.0059637519175
4 6:0.967792017083
4 7:0.823246491657
4 8:0.250738170131
4 9:0.0922125568183
4 10:0.0933798370502
4 11:0.145994320487
5 6:0.970911169935
5 7:0.827952698504
5 8:0.253344646591
5 9:0.0931868385882
5 10:0.0941860604824
5 11:0.146422638878
6 7:0.541501897778
6 8:0.796322622938
6 9:0.952963440791
6 10:0.954157401546
6 11:0.931014517076
7 8:0.731157379384
7 9:0.804800453458
7 10:0.806052235377
7 11:0.797184640648
8 9:0.225401784914
8 10:0.227026335637
8 11:0.210930129708
9 10:0.00436245107051
9 11:0.0741994051824
10 11:0.0737711510704
</hsp>