sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X2316-X2315
X
>1X9C-A5-D6
X
>2P7F-A5-D6
X
>3B5S-A5-C6
X
>3CR1-A5-C6
X
>3GS1-A5-D6
X
>3BBI-A5-C6
X
>2NPY-A5-D6
X
>3BBM-A5-C6
X
</seq>
<hsp>
0 1:0.958481855683
0 2:1.0
0 3:0.943228106163
0 4:0.986828393834
0 5:0.970377373414
0 6:0.962871350442
0 7:0.966212504626
0 8:0.974225130032
1 2:0.124781777608
1 3:0.064362699509
1 4:0.0929061716496
1 5:0.0612205825519
1 6:0.0551546979747
1 7:0.0652506748645
1 8:0.0840486720038
2 3:0.0930323291049
2 4:0.0391153202357
2 5:0.0998010766231
2 6:0.0924418370395
2 7:0.0983688680658
2 8:0.0795198491035
3 4:0.0675742109368
3 5:0.0747572521073
3 6:0.0436196539641
3 7:0.0607577622828
3 8:0.0746501685116
4 5:0.0727920040508
4 6:0.0591364767751
4 7:0.0665067871427
4 8:0.0489607057051
5 6:0.0559888821994
5 7:0.0386117972363
5 8:0.0461816168743
6 7:0.0390916864086
6 8:0.0572339651167
7 8:0.0394605850251
</hsp>