sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A565-A564
X
>2J01-A565-A564
X
>3F1F-A574-A573
X
>3OI1-A565-A564
X
>3OHJ-A565-A564
X
>3OHK-A565-A564
X
>3OH5-A565-A564
X
>3OH7-A565-A564
X
</seq>
<hsp>
0 1:0.0419873300126
0 2:0.840770692856
0 3:0.670339775107
0 4:0.540808161681
0 5:0.54354996791
0 6:0.565209985016
0 7:0.565199780314
1 2:0.826375811859
1 3:0.660208371063
1 4:0.523029567561
1 5:0.523528496414
1 6:0.542912057454
1 7:0.541053875853
2 3:1.0
2 4:0.886948868142
2 5:0.91048018893
2 6:0.624674040423
2 7:0.651024827094
3 4:0.258669396837
3 5:0.28206649237
3 6:0.497001307243
3 7:0.494801046705
4 5:0.0889476263076
4 6:0.378446429709
4 7:0.377074399523
5 6:0.387895766273
5 7:0.370753697267
6 7:0.0770947606513
</hsp>