sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3F1E-A999-A998
X
>3D2G-B12-B11
X
>2CKY-A12-A11
X
>3D2V-B12-B11
X
>3D2G-A12-A11
X
>2CKY-B12-B11
X
>3D2X-A12-A11
X
>2GDI-X11-X10
X
</seq>
<hsp>
0 1:0.72748272405
0 2:0.869163659646
0 3:0.742606789041
0 4:0.718993720494
0 5:0.999998241068
0 6:0.678365963143
0 7:0.980681596271
1 2:0.293195859124
1 3:0.168346941802
1 4:0.167877476089
1 5:0.545047118093
1 6:0.263334886192
1 7:0.383743797322
2 3:0.174407278583
2 4:0.3212105918
2 5:0.523409632622
2 6:0.219744453987
2 7:0.246032713207
3 4:0.227632740012
3 5:0.501664444696
3 6:0.141520891243
3 7:0.316335443143
4 5:0.552899154745
4 6:0.249054910401
4 7:0.403206798256
5 6:0.50679190422
5 7:0.618565116076
6 7:0.383011962882
</hsp>