sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5H-886-885
X
>2J00-A1502-A1500
X
>3U5H-51022-51021
X
>2J02-A1502-A1500
X
>3U5B-233-232
X
>3U5F-633-632
X
>3R8N-A132-A131
X
</seq>
<hsp>
0 1:0.942975787912
0 2:0.797296968426
0 3:0.880837863001
0 4:0.251511365543
0 5:0.26880601343
0 6:0.341475377865
1 2:0.282824853671
1 3:0.0894606337054
1 4:0.97716747281
1 5:1.0
1 6:0.962772771572
2 3:0.239779071923
2 4:0.783115686026
2 5:0.804679843021
2 6:0.742110823835
3 4:0.91785524347
3 5:0.942185576951
3 6:0.903093571185
4 5:0.0502646540116
4 6:0.173366201563
5 6:0.165834847776
</hsp>