sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-02088-02079
X
>3KNH-A1329-A939
X
>3OHY-A1124-A1104
X
>3OI0-A1124-A1104
X
>3OHC-A1124-A1104
X
>3OHD-A1124-A1104
X
>3OGE-A1124-A1104
X
>3OGY-A1124-A1104
X
>2J02-A1124-A1104
X
>2J00-A1124-A1104
X
</seq>
<hsp>
0 1:0.722256678507
0 2:0.665568531245
0 3:0.666191815616
0 4:0.633916430893
0 5:0.632433483815
0 6:0.669755112268
0 7:0.667388821148
0 8:0.638063883768
0 9:0.636991567252
1 2:0.969452604109
1 3:0.970861859844
1 4:0.942645398336
1 5:0.942002063406
1 6:1.0
1 7:0.99877049702
1 8:0.953477241053
1 9:0.952702863467
2 3:0.00535040947412
2 4:0.0512411156319
2 5:0.0527853739522
2 6:0.0517643981889
2 7:0.0535642893867
2 8:0.0983081801472
2 9:0.100565648722
3 4:0.0508536229792
3 5:0.0523364483881
3 6:0.0487982753965
3 7:0.0504761229986
3 8:0.0953072585898
3 9:0.0975199044051
4 5:0.00290247454275
4 6:0.0628668677008
4 7:0.0617783245962
4 8:0.0712674356994
4 9:0.0729983752353
5 6:0.063598490408
5 7:0.0623331557146
5 8:0.0697774357706
5 9:0.0715065300241
6 7:0.00457031961737
6 8:0.0844738658888
6 9:0.0862000133591
7 8:0.0812379049278
7 9:0.0829288065606
8 9:0.00394134971088
</hsp>