sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A975-A579
X
>2J01-A975-A579
X
>3OH5-A975-A579
X
>3OH7-A975-A579
X
>3OHZ-A975-A579
X
>3OI1-A975-A579
X
>3OHJ-A975-A579
X
>3OHK-A975-A579
X
>3KNK-A980-A579
X
>1U9S-A45-A91
X
</seq>
<hsp>
0 1:0.0239702491474
0 2:0.241206997144
0 3:0.235946775137
0 4:0.278265202817
0 5:0.296537250719
0 6:0.242654975654
0 7:0.237268516891
0 8:0.350125821232
0 9:0.997866007178
1 2:0.24645920241
1 3:0.23891596205
1 4:0.278920685691
1 5:0.297328898141
1 6:0.243661252885
1 7:0.237860147236
1 8:0.34969875306
1 9:0.999999260223
2 3:0.0509144963119
2 4:0.125835366694
2 5:0.137896366135
2 6:0.0880804035354
2 7:0.0954430081525
2 8:0.189190653172
2 9:0.867265578321
3 4:0.116612709406
3 5:0.135765049126
3 6:0.0750439765317
3 7:0.0760218203903
3 8:0.181760378186
3 9:0.864893031624
4 5:0.0392261005947
4 6:0.0607911135462
4 7:0.0672224143513
4 8:0.182233699637
4 9:0.81784082723
5 6:0.0843693366863
5 7:0.0877756009478
5 8:0.176286837994
5 9:0.812184433125
6 7:0.0274880086115
6 8:0.169809617938
6 9:0.830828416314
7 8:0.164966650703
7 9:0.833843214724
8 9:0.733398519888
</hsp>