sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-12085-12112
X
>3U5H-52089-52116
X
>2UXC-A1338-A948
X
>3OHJ-A540-A2608
X
>3OH5-A540-A2608
X
>3OH7-A540-A2608
X
>3OHK-A540-A2608
X
>2J03-A540-A2655
X
>2J01-A540-A2655
X
</seq>
<hsp>
0 1:0.0293074236566
0 2:0.406917330047
0 3:0.963174567911
0 4:0.948068887572
0 5:0.951993152294
0 6:0.969852435946
0 7:1.0
0 8:0.999933164452
1 2:0.406253679454
1 3:0.9526587102
1 4:0.937398070247
1 5:0.941328375666
1 6:0.959266594647
1 7:0.989231247758
1 8:0.989146115222
2 3:0.856400884918
2 4:0.842209170799
2 5:0.844761371269
2 6:0.860088193144
2 7:0.895272675222
2 8:0.894494939712
3 4:0.0364879248374
3 5:0.035361895106
3 6:0.0145747581996
3 7:0.11832823597
3 8:0.116098782396
4 5:0.00954283557204
4 6:0.0393207586742
4 7:0.110431090214
4 8:0.108238934276
5 6:0.0353242027233
5 7:0.105171312693
5 8:0.102930775356
6 7:0.112762009804
6 8:0.110319696499
7 8:0.00395118648685
</hsp>