sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A644-A2343
X
>1XMQ-A1185-A1180
X
>2VQF-A1190-A1185
X
>2UUA-A1190-A1185
X
>3OI0-A1190-A1185
X
>3OHY-A1190-A1185
X
>2VQE-A1190-A1185
X
>1N32-A1190-A1185
X
>3OHC-A1190-A1185
X
>3OHD-A1190-A1185
X
>2UXC-A1190-A1185
X
>1FJG-A1190-A1185
X
</seq>
<hsp>
0 1:0.959679257374
0 2:0.99999983186
0 3:0.925059882187
0 4:0.916309996813
0 5:0.915674282494
0 6:0.983944262046
0 7:0.981257910374
0 8:0.876332399327
0 9:0.878307411199
0 10:0.922473326889
0 11:0.963834596611
1 2:0.124806267854
1 3:0.0763523153149
1 4:0.266631101048
1 5:0.270033104392
1 6:0.0778054439187
1 7:0.0686216724744
1 8:0.227092502186
1 9:0.225173675485
1 10:0.14600467485
1 11:0.193176720835
2 3:0.158969534876
2 4:0.339257050942
2 5:0.342053218692
2 6:0.0754380445401
2 7:0.153107366743
2 8:0.294867384927
2 9:0.293634144494
2 10:0.197907523857
2 11:0.212686072985
3 4:0.236500728608
3 5:0.240057491497
3 6:0.10127713694
3 7:0.080977470137
3 8:0.188152595439
3 9:0.186005178305
3 10:0.0846080381018
3 11:0.162630195178
4 5:0.00672245747126
4 6:0.286404241703
4 7:0.268554193642
4 8:0.0842973903577
4 9:0.0821256912247
4 10:0.21537548214
4 11:0.186162970047
5 6:0.289690636068
5 7:0.271542806537
5 8:0.0844932670356
5 9:0.0827137754493
5 10:0.21769513288
5 11:0.188086210053
6 7:0.103939668031
6 8:0.244453590715
6 9:0.242680712152
6 10:0.153290795802
6 11:0.163633014337
7 8:0.228375113348
7 9:0.226492221723
7 10:0.122727478692
7 11:0.188594645645
8 9:0.0060388547127
8 10:0.161276523363
8 11:0.148597959694
9 10:0.159752056327
9 11:0.147367892677
10 11:0.144981693227
</hsp>