sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11593-12310
X
>3CMA-01321-0442
X
>3U5H-51389-5340
X
>3CCM-01321-0442
X
>2QEX-01321-0442
X
>3CC7-01321-0442
X
>1VQP-01321-0442
X
>1VQN-01321-0442
X
>1VQ4-01321-0442
X
</seq>
<hsp>
0 1:0.936957338226
0 2:0.936562365215
0 3:0.954399968053
0 4:1.0
0 5:0.973093023829
0 6:0.899867357707
0 7:0.970607804986
0 8:0.992343925188
1 2:0.209025323285
1 3:0.188029208288
1 4:0.295783774239
1 5:0.257880730352
1 6:0.230404234536
1 7:0.286628069685
1 8:0.384884744636
2 3:0.0804645844013
2 4:0.156729039587
2 5:0.115026720823
2 6:0.197098392145
2 7:0.163800009856
2 8:0.220995447946
3 4:0.126537330522
3 5:0.0877486326422
3 6:0.168316716061
3 7:0.132978353136
3 8:0.208867015205
4 5:0.0628921119263
4 6:0.195374149492
4 7:0.096424999905
4 8:0.127149579616
5 6:0.175611402038
5 7:0.0914338786592
5 8:0.136524666685
6 7:0.134332276953
6 8:0.253698432395
7 8:0.134181146945
</hsp>