sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3PDR-X72-X44
X
>2UUB-A253-A223
X
>3PDR-A72-A44
X
>3OGY-A253-A223
X
>2ZJR-X100-X84
X
>2VQE-A253-A223
X
>2UXC-A682-A667
X
>3OGY-A682-A667
X
>2UUB-A682-A667
X
>3U5B-2352-2316
X
>2QA4-01888-02113
X
</seq>
<hsp>
0 1:0.400123055388
0 2:0.135416401884
0 3:0.397576730507
0 4:0.567405829475
0 5:0.463282226639
0 6:0.572672132515
0 7:0.614648378771
0 8:0.577696670269
0 9:0.8515052798
0 10:0.999998397496
1 2:0.335337041056
1 3:0.124466852526
1 4:0.23461011945
1 5:0.101370567121
1 6:0.222414096122
1 7:0.279247281634
1 8:0.22784073763
1 9:0.490934885946
1 10:0.61680314058
2 3:0.326324460813
2 4:0.491150060168
2 5:0.38426725822
2 6:0.521957612083
2 7:0.542961771815
2 8:0.524573939282
2 9:0.788729193
2 10:0.922943445647
3 4:0.238892576919
3 5:0.102406367567
3 6:0.250771079637
3 7:0.329936786672
3 8:0.249241863528
3 9:0.509688538707
3 10:0.621084937381
4 5:0.19630704078
4 6:0.157971172
4 7:0.263623251129
4 8:0.161199351652
4 9:0.323531662263
4 10:0.474362806219
5 6:0.201241023819
5 7:0.245236378325
5 8:0.196839534725
5 9:0.444281539419
5 10:0.549671600618
6 7:0.234805208497
6 8:0.034276679096
6 9:0.294619137113
6 10:0.458857832336
7 8:0.227438203282
7 9:0.347374233085
7 10:0.46275903435
8 9:0.290625315498
8 10:0.450466985001
9 10:0.242185509309
</hsp>