sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5B-2752-237
X
>1VQP-02202-02142
X
>1N32-A253-A223
X
>1Q82-A1889-A2114
X
>2QA4-02201-02141
X
>3CCJ-01889-02114
X
>1XMQ-A253-A223
X
>2VQF-A253-A223
X
>3F1G-A253-A223
X
>3F1E-A253-A223
X
</seq>
<hsp>
0 1:1.0
0 2:0.346055392966
0 3:0.658848597286
0 4:0.940725703979
0 5:0.877397383541
0 6:0.23568293449
0 7:0.225857998821
0 8:0.14052644448
0 9:0.136497452431
1 2:0.704965884546
1 3:0.370131128013
1 4:0.160720299736
1 5:0.289223128498
1 6:0.803537955641
1 7:0.806253956398
1 8:0.965698588843
1 9:0.971427247804
2 3:0.400247334235
2 4:0.635546441135
2 5:0.616701473842
2 6:0.121739342081
2 7:0.181141756876
2 8:0.337318098326
2 9:0.337987375516
3 4:0.34662012527
3 5:0.25645786544
3 6:0.476800455159
3 7:0.459867802284
3 8:0.608982083525
3 9:0.61547734826
4 5:0.362785421655
4 6:0.737463757075
4 7:0.747597630664
4 8:0.910508029746
4 9:0.915464622422
5 6:0.694821642522
5 7:0.674939181488
5 8:0.814508542219
5 9:0.821145692046
6 7:0.0912059307609
6 8:0.225672214993
6 9:0.22554471039
7 8:0.175248972627
7 9:0.178689657194
8 9:0.0124782962229
</hsp>