sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A162-A448
X
>3OI0-A253-A223
X
>2J01-A162-A448
X
>3OHD-A253-A223
X
>3KNH-A1431-A317
X
>3KNI-A197-A165
X
>3F1F-A200-A168
X
>3F1H-A200-A168
X
</seq>
<hsp>
0 1:0.693075964068
0 2:0.00926409586536
0 3:0.683304758035
0 4:0.997787290736
0 5:0.805493497218
0 6:0.815955632859
0 7:0.813033636739
1 2:0.693695588671
1 3:0.0352176973068
1 4:0.496432774644
1 5:0.244482599244
1 6:0.250102175326
1 7:0.245449663186
2 3:0.683864877129
2 4:1.0
2 5:0.806899521381
2 6:0.817428784133
2 7:0.814492363075
3 4:0.501949514457
3 5:0.270074165464
3 6:0.275195204062
3 7:0.270450779624
4 5:0.40431212966
4 6:0.384204610219
4 7:0.383881551366
5 6:0.0265755337784
5 7:0.0285675362335
6 7:0.0100362323719
</hsp>