sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1N32-A1251-A1258
X
>3OHC-A1426-A165
X
>2J02-A1251-A1258
X
>3OGE-A1251-A1258
X
>3OGY-A1251-A1258
X
>3OHY-A1251-A1258
X
>3OHD-A1251-A1258
X
>3R8O-A1090-A1107
X
</seq>
<hsp>
0 1:0.933275771893
0 2:0.173977893165
0 3:0.140585523418
0 4:0.140470321222
0 5:0.113046033594
0 6:0.156787007312
0 7:0.312542944672
1 2:0.963355479466
1 3:0.999346423642
1 4:1.0
1 5:0.974764062545
1 6:0.982765961861
1 7:0.923040760455
2 3:0.16648950097
2 4:0.166925103247
2 5:0.146521900926
2 6:0.112490072249
2 7:0.278008114663
3 4:0.00332053670966
3 5:0.0710223542661
3 6:0.0890311761535
3 7:0.272049519256
4 5:0.0706000017309
4 6:0.0898358228763
4 7:0.274021076646
5 6:0.0791754754798
5 7:0.286787703138
6 7:0.256291668984
</hsp>