sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5F-61188-61171
X
>3R8T-A676-A191
X
>3U5B-21176-21159
X
>2J00-A343-A304
X
>2J03-A685-A173
X
>2J01-A685-A173
X
</seq>
<hsp>
0 1:0.22493919412
0 2:0.112088662463
0 3:0.907984352517
0 4:0.23211443783
0 5:0.231649190665
1 2:0.238185770739
1 3:0.976867037429
1 4:0.1855439842
1 5:0.181923526012
2 3:0.956751904199
2 4:0.181490797986
2 5:0.1824394246
3 4:1.0
3 5:0.998951494143
4 5:0.00765762112003
</hsp>