sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3U5D-11950-12710
X
>2J03-A1710-A2466
X
>2J01-A1710-A2466
X
>3OHJ-A1710-A2419
X
>2VQF-A836-A890
X
>3OHK-A1710-A2419
X
>3OXB-B39-A84
X
>3OXM-B40-A84
X
>3F1F-A1788-A2573
X
>3OXB-A40-B83
X
</seq>
<hsp>
0 1:0.314199349844
0 2:0.309856663518
0 3:0.290152941954
0 4:0.935311401011
0 5:0.279719251499
0 6:0.65944153249
0 7:0.653442598393
0 8:0.341314641626
0 9:0.51838939338
1 2:0.0266688616351
1 3:0.178454295446
1 4:0.985824244448
1 5:0.169865427333
1 6:0.810968006642
1 7:0.833653325673
1 8:0.178908754371
1 9:0.670646782595
2 3:0.191725591916
2 4:1.0
2 5:0.18096344776
2 6:0.816152495249
2 7:0.836690894692
2 8:0.187414636332
2 9:0.675909615363
3 4:0.822492879173
3 5:0.0437685733681
3 6:0.711107588513
3 7:0.726455915266
3 8:0.176998604418
3 9:0.560676864204
4 5:0.831846145968
4 6:0.634217633022
4 7:0.640748470197
4 8:0.938737131754
4 9:0.593950920799
5 6:0.698602476373
5 7:0.713623855953
5 8:0.180280048013
5 9:0.550154525265
6 7:0.134400338249
6 8:0.849458788133
6 9:0.188511798569
7 8:0.859248798073
7 9:0.200325147012
8 9:0.693035742794
</hsp>