sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QA4-0830-0868
X
>3KNI-A1110-A995
X
>3F1F-A1174-A1007
X
>2J03-A1104-A989
X
>3OHJ-A1104-A989
X
>3OHK-A1104-A989
X
>3OH7-A1104-A989
X
>3KNI-A2670-A2446
X
>3OH5-A1104-A989
X
>3OHZ-A1104-A989
X
</seq>
<hsp>
0 1:0.982455009398
0 2:0.966119708133
0 3:0.964412331949
0 4:0.985437145181
0 5:0.986017702966
0 6:0.992546112883
0 7:0.962321519179
0 8:0.989207215438
0 9:0.999999986893
1 2:0.0656900384429
1 3:0.0536459391306
1 4:0.0615487545013
1 5:0.0646617378304
1 6:0.0573231611742
1 7:0.0935384098838
1 8:0.0572143737196
1 9:0.0488709074192
2 3:0.0636907616018
2 4:0.0437063526145
2 5:0.0436932202197
2 6:0.0456545750449
2 7:0.111410157997
2 8:0.0401867224813
2 9:0.0587849799738
3 4:0.0764623475311
3 5:0.0784737930923
3 6:0.0767876336355
3 7:0.0684889142765
3 8:0.0721311385857
3 9:0.0672154698195
4 5:0.0144153152642
4 6:0.0310269235276
4 7:0.113232241127
4 8:0.0274680161765
4 9:0.0310196867603
5 6:0.0281167710008
5 7:0.111926996804
5 8:0.029702790541
5 9:0.0349310989895
6 7:0.119336985875
6 8:0.0134960521216
6 9:0.0345165726165
7 8:0.119471590044
7 9:0.0994313691376
8 9:0.0344451240154
</hsp>