sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2ZJR-X1487-X1268
X
>3F1H-A1588-A1372
X
>3OWI-A12-A20
X
>1VQM-0139-0429
X
>1VQK-0139-0429
X
>1VQ9-0139-0429
X
>1VQO-0139-0429
X
>1VQP-0139-0429
X
>1VQN-0139-0429
X
>1VQL-0139-0429
X
</seq>
<hsp>
0 1:0.126848633987
0 2:0.923342819054
0 3:0.631707798135
0 4:0.591911324895
0 5:0.616514847292
0 6:0.597490664682
0 7:0.6238127418
0 8:0.601883866671
0 9:0.616477988426
1 2:1.0
1 3:0.612278788586
1 4:0.572058056178
1 5:0.591212523278
1 6:0.57881204985
1 7:0.600509220854
1 8:0.574598864096
1 9:0.593201768212
2 3:0.844392673963
2 4:0.818148989912
2 5:0.878178379196
2 6:0.832329580315
2 7:0.856554684746
2 8:0.897217554154
2 9:0.862018640598
3 4:0.0799607060204
3 5:0.0657992654772
3 6:0.0460651201876
3 7:0.0440594885005
3 8:0.0823725647732
3 9:0.0464534035453
4 5:0.077685092171
4 6:0.0442252568174
4 7:0.0608700764406
4 8:0.101567585532
4 9:0.0654114671914
5 6:0.0556684092781
5 7:0.0389034538271
5 8:0.0456272939569
5 9:0.0321563339753
6 7:0.0381116465515
6 8:0.0725405836813
6 9:0.0364841441173
7 8:0.0617796529241
7 9:0.0159733843254
8 9:0.0477748711191
</hsp>