sequences=7
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A1115-A1178
X
>3SD1-A33-A7
X
>2J02-A1485-A759
X
>3OHD-A89-A141
X
>3OHC-A89-A141
X
>2J00-A1485-A759
X
>3F1E-A759-A1485
X
</seq>
<hsp>
0 1:0.523576362031
0 2:0.702032553195
0 3:0.583228018458
0 4:0.58578400519
0 5:0.729351845477
0 6:0.76103313819
1 2:0.875532401725
1 3:0.0780756394966
1 4:0.0802533118164
1 5:0.869965979317
1 6:0.967999475257
2 3:0.904495620266
2 4:0.907592575455
2 5:0.0631286656382
2 6:0.145588570815
3 4:0.00723122987897
3 5:0.897111548263
3 6:0.996889790449
4 5:0.900224836269
4 6:1.0
5 6:0.159583084327
</hsp>