sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8N-A606-A307
X
>3R8O-A606-A307
X
>3OHJ-A655-A2199
X
>3OHK-A437-A389
X
>3U5D-168-1310
X
>2ZJR-X356-X308
X
</seq>
<hsp>
0 1:0.183688316034
0 2:0.134631652336
0 3:0.974630505774
0 4:0.274875545994
0 5:0.706549979437
1 2:0.246558890472
1 3:0.863399552945
1 4:0.1943445526
1 5:0.617162033615
2 3:0.991975611435
2 4:0.287431971989
2 5:0.708028069492
3 4:1.0
3 5:0.338072243311
4 5:0.758306563016
</hsp>