sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2HO6-B106-B16
X
>2GCS-B106-B16
X
>2H0W-B106-B16
X
>3G9C-R99-R46
X
>2H0S-B106-B16
X
>2NZ4-S124-S31
X
>2NZ4-Q124-Q31
X
>3G9C-P99-P46
X
>3L3C-R124-R31
X
</seq>
<hsp>
0 1:0.633947887728
0 2:0.139404620366
0 3:0.250801164294
0 4:0.575037317988
0 5:0.999995911207
0 6:0.783646623859
0 7:0.462558927505
0 8:0.617054814457
1 2:0.58333578161
1 3:0.594503065752
1 4:0.131995335721
1 5:0.765448229606
1 6:0.615114777047
1 7:0.519099447396
1 8:0.557379458796
2 3:0.227977831242
2 4:0.519124092506
2 5:0.900342274528
2 6:0.681305321762
2 7:0.359658964726
2 8:0.527271016946
3 4:0.542836077928
3 5:0.95672822576
3 6:0.713580536059
3 7:0.320643639692
3 8:0.568105278213
4 5:0.700709548188
4 6:0.552266278356
4 7:0.444797185241
4 8:0.460197493676
5 6:0.27994250058
5 7:0.68738320613
5 8:0.409875242457
6 7:0.466945705111
6 8:0.224640611753
7 8:0.347908798855
</hsp>