sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A1513-A1331
X
>1N32-A1228-A1331
X
>2VQF-A1228-A1331
X
>2UXC-A1228-A1331
X
>3F1G-A161-A92
X
>3F1E-A161-A92
X
>3G8T-P124-P31
X
>3G9C-S124-S31
X
</seq>
<hsp>
0 1:0.735290281095
0 2:0.705561205977
0 3:0.704401965468
0 4:0.27537598025
0 5:0.270587170625
0 6:0.431702471023
0 7:0.386546650713
1 2:0.116742620398
1 3:0.138995833828
1 4:0.848663354999
1 5:0.842463766496
1 6:0.999994912485
1 7:0.96292814425
2 3:0.0915031629595
2 4:0.804774648583
2 5:0.799071971409
2 6:0.945256800879
2 7:0.914333657972
3 4:0.81421937075
3 5:0.808427477059
3 6:0.956150795559
3 7:0.925092053043
4 5:0.0117022297536
4 6:0.185125568378
4 7:0.153520010532
5 6:0.190155943269
5 7:0.155521507747
6 7:0.109084703797
</hsp>