sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3R8S-A2504-A2568
X
>3OH7-A2341-A2405
X
>3OHK-A2341-A2405
X
>3OHJ-A2341-A2405
X
>3OH5-A2341-A2405
X
>2ZJR-X2298-X2362
X
>3OHZ-A2341-A2405
X
>3OI1-A2341-A2405
X
>2J03-A2388-A2452
X
>2J01-A2388-A2452
X
</seq>
<hsp>
0 1:0.471745579492
0 2:0.428732182804
0 3:0.481891502413
0 4:0.57321514775
0 5:0.725938419915
0 6:0.478674505537
0 7:0.502061645916
0 8:0.614188023814
0 9:0.592280174696
1 2:0.345320235257
1 3:0.342697075891
1 4:0.225665798305
1 5:0.97652236802
1 6:0.623621374817
1 7:0.620496150006
1 8:0.616466690385
1 9:0.605558988318
2 3:0.136684780087
2 4:0.443232576301
2 5:0.841200554295
2 6:0.561509577383
2 7:0.537125839024
2 8:0.614860852861
2 9:0.606391427029
3 4:0.38132461428
3 5:0.849449891498
3 6:0.605554804593
3 7:0.59001065062
3 8:0.559169023309
3 9:0.553101616888
4 5:1.0
4 6:0.753728631471
4 7:0.756610425721
4 8:0.543618605681
4 9:0.533306013761
5 6:0.838014162364
5 7:0.798257604336
5 8:0.62378759605
5 9:0.636956993653
6 7:0.180515422888
6 8:0.814234785599
6 9:0.803912500274
7 8:0.793257572442
7 9:0.788258170072
8 9:0.0656884045102
</hsp>