sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J02-A1413-A1437
X
>3U5D-11065-11081
X
>2VQE-A191-A176
X
>3U5H-5889-5754
X
>1XMQ-A191-A176
X
>2J00-A1413-A1437
X
>3U5D-1883-1748
X
>3CCR-0887-0751
X
>2UUA-A191-A176
X
>1FJG-A191-A176
X
</seq>
<hsp>
0 1:0.513025531303
0 2:0.654942629456
0 3:0.62894638649
0 4:0.666626048376
0 5:0.511404174061
0 6:0.630606984862
0 7:1.0
0 8:0.800693431764
0 9:0.697994717123
1 2:0.217064338604
1 3:0.377632743828
1 4:0.366337560284
1 5:0.317942259488
1 6:0.415248521215
1 7:0.640456870744
1 8:0.395354898085
1 9:0.31886437753
2 3:0.360292642858
2 4:0.325588409112
2 5:0.360354052451
2 6:0.403103442036
2 7:0.49425681089
2 8:0.230188389511
2 9:0.265910450826
3 4:0.173178378196
3 5:0.34626860147
3 6:0.153951480856
3 7:0.539444600493
3 8:0.365189160151
3 9:0.360967415492
4 5:0.304285800934
4 6:0.246632614844
4 7:0.557325492466
4 8:0.30168336514
4 9:0.3677428085
5 6:0.403543882392
5 7:0.751289998156
5 8:0.410585689907
5 9:0.466291442458
6 7:0.517900068007
6 8:0.396733671352
6 9:0.376709925244
7 8:0.405145872036
7 9:0.41427853575
8 9:0.293080497903
</hsp>