ClaRNA

Doublet Group distance statistics: 50574

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Distances from reference structure (by RMSD)

2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
O4' A 0, 0.000, 0.002, 0.003, 0.003 max_d=0.003 avg_d=0.002 std_dev=0.002
N1 A 0, 0.000, 0.003, 0.005, 0.005 max_d=0.005 avg_d=0.003 std_dev=0.003
C5 A 0, 0.000, 0.003, 0.006, 0.006 max_d=0.006 avg_d=0.003 std_dev=0.003
C6 A 0, 0.000, 0.003, 0.007, 0.007 max_d=0.007 avg_d=0.003 std_dev=0.003
N3 A 0, 0.000, 0.004, 0.007, 0.007 max_d=0.007 avg_d=0.004 std_dev=0.004
C1' A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
C2 A 0, 0.000, 0.004, 0.008, 0.008 max_d=0.008 avg_d=0.004 std_dev=0.004
C4 A 0, 0.000, 0.005, 0.010, 0.010 max_d=0.010 avg_d=0.005 std_dev=0.005
O2 A 0, 0.000, 0.007, 0.013, 0.013 max_d=0.013 avg_d=0.007 std_dev=0.007
C4' A 0, 0.000, 0.007, 0.014, 0.014 max_d=0.014 avg_d=0.007 std_dev=0.007
O3' A 0, 0.000, 0.010, 0.020, 0.020 max_d=0.020 avg_d=0.010 std_dev=0.010
C2' A 0, 0.000, 0.011, 0.021, 0.021 max_d=0.021 avg_d=0.011 std_dev=0.011
C3' A 0, 0.000, 0.011, 0.021, 0.021 max_d=0.021 avg_d=0.011 std_dev=0.011
C5' A 0, 0.000, 0.017, 0.034, 0.034 max_d=0.034 avg_d=0.017 std_dev=0.017
O4 A 0, 0.000, 0.020, 0.040, 0.040 max_d=0.040 avg_d=0.020 std_dev=0.020
O2' A 0, 0.000, 0.022, 0.043, 0.043 max_d=0.043 avg_d=0.022 std_dev=0.022
N4 B 0, 0.000, 0.024, 0.047, 0.047 max_d=0.047 avg_d=0.024 std_dev=0.024
N3 B 0, 0.000, 0.028, 0.057, 0.057 max_d=0.057 avg_d=0.028 std_dev=0.028
C4 B 0, 0.000, 0.029, 0.057, 0.057 max_d=0.057 avg_d=0.029 std_dev=0.029
O5' A 0, 0.000, 0.029, 0.059, 0.059 max_d=0.059 avg_d=0.029 std_dev=0.029
C2 B 0, 0.000, 0.034, 0.068, 0.068 max_d=0.068 avg_d=0.034 std_dev=0.034
O2 B 0, 0.000, 0.035, 0.071, 0.071 max_d=0.071 avg_d=0.035 std_dev=0.035
C5 B 0, 0.000, 0.037, 0.074, 0.074 max_d=0.074 avg_d=0.037 std_dev=0.037
OP2 A 0, 0.000, 0.040, 0.080, 0.080 max_d=0.080 avg_d=0.040 std_dev=0.040
N1 B 0, 0.000, 0.041, 0.081, 0.081 max_d=0.081 avg_d=0.041 std_dev=0.041
P A 0, 0.000, 0.041, 0.082, 0.082 max_d=0.082 avg_d=0.041 std_dev=0.041
C1' B 0, 0.000, 0.041, 0.082, 0.082 max_d=0.082 avg_d=0.041 std_dev=0.041
C6 B 0, 0.000, 0.045, 0.089, 0.089 max_d=0.089 avg_d=0.045 std_dev=0.045
C2' B 0, 0.000, 0.045, 0.089, 0.089 max_d=0.089 avg_d=0.045 std_dev=0.045
O2' B 0, 0.000, 0.046, 0.092, 0.092 max_d=0.092 avg_d=0.046 std_dev=0.046
OP1 A 0, 0.000, 0.047, 0.094, 0.094 max_d=0.094 avg_d=0.047 std_dev=0.047
C3' B 0, 0.000, 0.050, 0.101, 0.101 max_d=0.101 avg_d=0.050 std_dev=0.050
O3' B 0, 0.000, 0.051, 0.101, 0.101 max_d=0.101 avg_d=0.051 std_dev=0.051
O4' B 0, 0.000, 0.051, 0.102, 0.102 max_d=0.102 avg_d=0.051 std_dev=0.051
C4' B 0, 0.000, 0.056, 0.113, 0.113 max_d=0.113 avg_d=0.056 std_dev=0.056
C5' B 0, 0.000, 0.067, 0.135, 0.135 max_d=0.135 avg_d=0.067 std_dev=0.067
O5' B 0, 0.000, 0.071, 0.142, 0.142 max_d=0.142 avg_d=0.071 std_dev=0.071
OP2 B 0, 0.000, 0.081, 0.162, 0.162 max_d=0.162 avg_d=0.081 std_dev=0.081
P B 0, 0.000, 0.082, 0.165, 0.165 max_d=0.165 avg_d=0.082 std_dev=0.082
OP1 B 0, 0.000, 0.091, 0.182, 0.182 max_d=0.182 avg_d=0.091 std_dev=0.091

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01
C2 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.01
C2' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01
C3' 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00
C4 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.01 0.01
C4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01
C5 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01
N1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01
N3 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01
O2 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.01 0.00 0.00 0.01 0.01 0.01
O2' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.01 0.01 0.02 0.00 0.01 0.01 0.00 0.01 0.02 0.01 0.01
O3' 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.01
O4 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01
O4' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01
O5' 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00
OP1 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.02 0.00 0.00 0.00 0.00
OP2 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00
P 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.00 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.02 0.01
C2 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00
C2' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01
C3' 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.02 0.01
C4 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.01
C4' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.02 0.02
C5 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01
C5' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.02 0.01
C6 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01
N1 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.01 0.01
N3 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00
O2 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00
O2' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.02 0.01 0.02 0.02 0.02 0.02
O3' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01
O4 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.01 0.01
O4' 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.02 0.02
O5' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.01 0.00
OP1 0.01 0.02 0.01 0.01 0.02 0.01 0.02 0.01 0.01 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.00 0.00 0.00 0.00
OP2 0.01 0.02 0.01 0.01 0.02 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.01 0.01 0.01 0.01 0.00 0.00 0.00
P 0.01 0.02 0.01 0.01 0.02 0.01 0.02 0.01 0.01 0.01 0.01 0.02 0.02 0.00 0.01 0.01 0.00 0.00 0.00 0.00

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3N4O2O2'O3'O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01
C2 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.01 0.01 0.01 0.01 0.01
C2' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.02 0.01
C3' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.01 0.02 0.01
C4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01
C4' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01
C5 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02
C5' 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00
C6 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01
N1 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01
N3 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01
N4 0.00 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01
O2 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.01 0.01 0.02 0.02 0.02
O2' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.00 0.00 0.00 0.01 0.01 0.02 0.01
O3' 0.01 0.02 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.00 0.01 0.02 0.02 0.02 0.02
O4' 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.00 0.01 0.01 0.01 0.01
O5' 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.00 0.00 0.00 0.00
OP1 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.00 0.00 0.00
OP2 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.02 0.02 0.01 0.00 0.00 0.00 0.00
P 0.01 0.01 0.01 0.01 0.01 0.01 0.02 0.00 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.00 0.00 0.00 0.00