sequences=16
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1KD1-A379-A386
X
>2OTL-01923-01930
X
>1YJ9-0379-0386
X
>1K8A-A819-A837
X
>3U5F-6876-6940
X
>1VQ6-01263-01309
X
>3CCR-01923-01930
X
>3CC7-0379-0386
X
>1YI2-0379-0386
X
>3CCQ-0379-0386
X
>3CCL-0379-0386
X
>3I56-0379-0386
X
>2OTL-0379-0386
X
>1VQ4-01263-01309
X
>1YJW-0379-0386
X
>3CCU-0379-0386
X
</seq>
<hsp>
0 1:0.554024221337
0 2:0.315570985204
0 3:0.321190456761
0 4:0.398638924529
0 5:0.407461274289
0 6:0.929499780552
0 7:0.279040768462
0 8:0.154835287369
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0 10:0.326185481105
0 11:0.352283932569
0 12:0.444049148787
0 13:0.571924396729
0 14:0.60623558211
0 15:0.418982468201
1 2:0.381036003589
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1 4:0.552218417529
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1 6:0.404592566412
1 7:0.395834866171
1 8:0.499315614887
1 9:0.431026529936
1 10:0.412253720576
1 11:0.415732518386
1 12:0.381565493248
1 13:0.453548561686
1 14:0.452355004733
1 15:0.425084842101
2 3:0.476477284113
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2 7:0.297188040216
2 8:0.25879246632
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3 4:0.358404334925
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3 6:0.999975537145
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3 10:0.34529177458
3 11:0.346963403728
3 12:0.445530499055
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3 15:0.463915999933
4 5:0.414434069513
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7 12:0.256585804861
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8 9:0.222148638207
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8 12:0.347619906062
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10 11:0.0731512670122
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11 12:0.130347579782
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11 14:0.317653526639
11 15:0.194283004243
12 13:0.269527003454
12 14:0.247360975817
12 15:0.167661354013
13 14:0.269296883487
13 15:0.332911964449
14 15:0.37156167941
</hsp>