sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3CCE-01263-01309
X
>3OHY-A1283-A1306
X
>3OI0-A1283-A1306
X
>3BNO-A3-B17
X
>3CCJ-01263-01309
X
>3NDB-M24-M60
X
>3G6E-968-9111
X
>3CCM-01263-01309
X
>1YJN-01263-01309
X
>1YIJ-01263-01309
X
>1YIT-01263-01309
X
>3CCU-01263-01309
X
</seq>
<hsp>
0 1:0.978455643302
0 2:0.977523049162
0 3:0.343674550436
0 4:0.450145445733
0 5:0.715938658445
0 6:0.729856042151
0 7:0.146624492407
0 8:0.360693787467
0 9:0.372634040455
0 10:0.332851222893
0 11:0.279168566515
1 2:0.0216376777205
1 3:0.783843606206
1 4:0.806591898987
1 5:0.636074072844
1 6:0.671874085957
1 7:0.999996023007
1 8:0.904911216261
1 9:0.952594497149
1 10:0.932223681893
1 11:0.921843699342
2 3:0.784637240952
2 4:0.810538739762
2 5:0.632039706047
2 6:0.670836907191
2 7:0.99950551522
2 8:0.904787538948
2 9:0.949533882409
2 10:0.929093042534
2 11:0.919297748638
3 4:0.432269932045
3 5:0.488071590795
3 6:0.44247179733
3 7:0.417076036367
3 8:0.242438258996
3 9:0.320509862322
3 10:0.315737387621
3 11:0.361336121521
4 5:0.695406482046
4 6:0.656095309207
4 7:0.421158389541
4 8:0.439144588901
4 9:0.595782717873
4 10:0.578045334948
4 11:0.499843937001
5 6:0.228992225175
5 7:0.750191283922
5 8:0.495349693375
5 9:0.483819150997
5 10:0.496007104019
5 11:0.565124025405
6 7:0.762022976549
6 8:0.45507011018
6 9:0.502094248714
6 10:0.528834969328
6 11:0.598186599018
7 8:0.37090571001
7 9:0.405674022684
7 10:0.363594774534
7 11:0.249285906123
8 9:0.200739672405
8 10:0.220156278005
8 11:0.25347498806
9 10:0.0733733722745
9 11:0.215096534142
10 11:0.164893380848
</hsp>