sequences=12
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3GX2-A25-A66
X
>3BNP-A4-B17
X
>3BNN-A17-B3
X
>2O3W-A4-B17
X
>1VQM-0274-0354
X
>3R8T-A1851-A1875
X
>1Q86-A954-A960
X
>1VQ6-0954-0960
X
>3BNQ-C19-D3
X
>3BNR-C5-D17
X
>1ZX7-E9-F4
X
>3CMA-0274-0354
X
</seq>
<hsp>
0 1:0.546959263875
0 2:0.466003461016
0 3:0.679830103089
0 4:0.655550568124
0 5:0.798220099507
0 6:0.737743264183
0 7:0.769629580025
0 8:0.621012471875
0 9:0.66826393951
0 10:0.589926759653
0 11:0.660632463467
1 2:0.248490433455
1 3:0.387775125522
1 4:0.571436132878
1 5:0.693320079664
1 6:0.959758101178
1 7:0.999999435564
1 8:0.593721306715
1 9:0.593963824925
1 10:0.551838393561
1 11:0.693402002493
2 3:0.269552099044
2 4:0.387525440133
2 5:0.565649168903
2 6:0.76948308697
2 7:0.786893378262
2 8:0.406990466439
2 9:0.4280120393
2 10:0.374238902839
2 11:0.508983965963
3 4:0.279884065043
3 5:0.391291870807
3 6:0.878314975995
3 7:0.851574083093
3 8:0.336739008218
3 9:0.333675244253
3 10:0.336078983635
3 11:0.449772065063
4 5:0.302489124699
4 6:0.82997418802
4 7:0.753127592544
4 8:0.160586101973
4 9:0.239476145889
4 10:0.294127154893
4 11:0.317640551151
5 6:0.93826816558
5 7:0.854333810957
5 8:0.359634827562
5 9:0.367289306915
5 10:0.383827836219
5 11:0.33476900898
6 7:0.221961372701
6 8:0.777711019797
6 9:0.774724585357
6 10:0.662221368143
6 11:0.668035762838
7 8:0.707352781166
7 9:0.72280127434
7 10:0.62757883836
7 11:0.602135515225
8 9:0.13145421789
8 10:0.217616501621
8 11:0.262300156807
9 10:0.175938789538
9 11:0.237716977144
10 11:0.184665432857
</hsp>