sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1Q81-B68-B111
X
>1YRJ-A5-B18
X
>2QA4-0818-0836
X
>2J03-A23-A524
X
>2J01-A23-A524
X
>3CPW-0819-0837
X
>3CCQ-0819-0837
X
>3CD6-0819-0837
X
>1VQ5-0819-0837
X
>3CCS-016-0505
X
</seq>
<hsp>
0 1:0.874996418806
0 2:0.3338370655
0 3:0.657836411682
0 4:0.607541860005
0 5:0.739533075969
0 6:0.679257068816
0 7:0.450282437789
0 8:0.541308802995
0 9:0.577553290914
1 2:0.997306735437
1 3:0.893123365282
1 4:0.886822752426
1 5:0.999988031605
1 6:0.7115443831
1 7:0.729568520082
1 8:0.866511851724
1 9:0.827100625412
2 3:0.482695120981
2 4:0.434417638779
2 5:0.600657270524
2 6:0.746875189176
2 7:0.417029343751
2 8:0.519490081744
2 9:0.64030060624
3 4:0.0703633960393
3 5:0.406616455658
3 6:0.709869561324
3 7:0.398850869795
3 8:0.560040790807
3 9:0.644416674794
4 5:0.372362848832
4 6:0.671546491886
4 7:0.348178441849
4 8:0.509049960324
4 9:0.604508415975
5 6:0.528799236841
5 7:0.43094052644
5 8:0.351114636577
5 9:0.590438222743
6 7:0.437586779935
6 8:0.292009878305
6 9:0.383196658684
7 8:0.325777082551
7 9:0.37556585449
8 9:0.402514772737
</hsp>