sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1ZEV-A1-B16
X
>3BNQ-A19-B5
X
>3BNS-C19-D3
X
>2VQF-A1039-A1170
X
>3BNR-A19-B4
X
>3BNS-C5-D17
X
>3BNS-A19-B4
X
>3BNO-C3-D17
X
>3BNQ-C5-D17
X
>1T0D-C10-D5
X
</seq>
<hsp>
0 1:0.48088586904
0 2:0.434339230824
0 3:0.662062018825
0 4:0.407937461338
0 5:0.411783413814
0 6:0.331167339393
0 7:0.369570549884
0 8:0.670499106186
0 9:0.526911901288
1 2:0.509780634852
1 3:0.916927211656
1 4:0.305466524845
1 5:0.647688599389
1 6:0.361633362048
1 7:0.645323130076
1 8:0.688937775083
1 9:0.829426863009
2 3:0.454846964083
2 4:0.579694993354
2 5:0.537062827331
2 6:0.286330174475
2 7:0.51187884659
2 8:0.701751810752
2 9:0.567140310655
3 4:0.963756896199
3 5:0.783239873135
3 6:0.624239532597
3 7:0.732352838889
3 8:1.0
3 9:0.67360152401
4 5:0.44460772216
4 6:0.417494251716
4 7:0.477075351081
4 8:0.618764306276
4 9:0.690653047832
5 6:0.507781839611
5 7:0.161944004173
5 8:0.70165539081
5 9:0.443217080559
6 7:0.484593246109
6 8:0.603240533505
6 9:0.550949073528
7 8:0.654265402837
7 9:0.398070044988
8 9:0.569411477873
</hsp>