sequences=6
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>3V7E-C25-C98
X
>3F1G-A1039-A1170
X
>3R8S-A1196-A1235
X
>2J03-A2002-A2110
X
>2J01-A2002-A2110
X
>3F1G-A1283-A1306
X
</seq>
<hsp>
0 1:0.919790052773
0 2:0.765651996655
0 3:0.999996984028
0 4:0.960817194878
0 5:0.768279114659
1 2:0.253605944149
1 3:0.393454809068
1 4:0.354225272524
1 5:0.262425877675
2 3:0.531645382411
2 4:0.491106165385
2 5:0.247882493736
3 4:0.0556377053681
3 5:0.420847977746
4 5:0.382518663083
</hsp>