ClaRNA

Doublet Group distance statistics: 50613

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Distances from reference structure (by RMSD)

1, 0, 0, 0, 2, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,

RMS Distances matrix

Distances graph

Distances from reference structure (by atoms)

Atom Chain Distances
O4 B 0, -0.062, 1.348, 2.759, 3.696 max_d=3.696 avg_d=1.348 std_dev=1.410
N3 B 0, -0.295, 1.277, 2.849, 3.967 max_d=3.967 avg_d=1.277 std_dev=1.572
O4 A 0, -0.690, 0.968, 2.626, 3.840 max_d=3.840 avg_d=0.968 std_dev=1.658
N3 A 0, -0.712, 0.977, 2.665, 3.901 max_d=3.901 avg_d=0.977 std_dev=1.688
O2 B 0, -0.449, 1.272, 2.993, 4.236 max_d=4.236 avg_d=1.272 std_dev=1.721
O2 A 0, -0.728, 1.020, 2.769, 4.048 max_d=4.048 avg_d=1.020 std_dev=1.748
C4 B 0, -0.390, 1.487, 3.364, 4.704 max_d=4.704 avg_d=1.487 std_dev=1.877
C2 B 0, -0.587, 1.428, 3.443, 4.906 max_d=4.906 avg_d=1.428 std_dev=2.015
C2 A 0, -0.877, 1.210, 3.297, 4.825 max_d=4.825 avg_d=1.210 std_dev=2.087
C4 A 0, -0.879, 1.211, 3.301, 4.831 max_d=4.831 avg_d=1.211 std_dev=2.090
C5 B 0, -0.934, 2.024, 4.981, 7.135 max_d=7.135 avg_d=2.024 std_dev=2.958
N1 B 0, -1.103, 1.916, 4.935, 7.140 max_d=7.140 avg_d=1.916 std_dev=3.019
N1 A 0, -1.304, 1.791, 4.885, 7.151 max_d=7.151 avg_d=1.791 std_dev=3.095
C5 A 0, -1.338, 1.837, 5.012, 7.337 max_d=7.337 avg_d=1.837 std_dev=3.175
O2' B 0, -1.209, 2.272, 5.752, 8.294 max_d=8.294 avg_d=2.272 std_dev=3.481
C6 B 0, -1.270, 2.236, 5.741, 8.302 max_d=8.302 avg_d=2.236 std_dev=3.505
O2' A 0, -1.399, 2.121, 5.640, 8.215 max_d=8.215 avg_d=2.121 std_dev=3.520
C2' B 0, -1.277, 2.250, 5.777, 8.355 max_d=8.355 avg_d=2.250 std_dev=3.527
C1' B 0, -1.339, 2.263, 5.865, 8.499 max_d=8.499 avg_d=2.263 std_dev=3.602
C2' A 0, -1.430, 2.180, 5.789, 8.430 max_d=8.430 avg_d=2.180 std_dev=3.609
C6 A 0, -1.536, 2.110, 5.757, 8.426 max_d=8.426 avg_d=2.110 std_dev=3.646
C1' A 0, -1.541, 2.120, 5.781, 8.462 max_d=8.462 avg_d=2.120 std_dev=3.661
C3' B 0, -1.710, 2.969, 7.648, 11.068 max_d=11.068 avg_d=2.969 std_dev=4.679
O4' B 0, -1.776, 2.963, 7.701, 11.167 max_d=11.167 avg_d=2.963 std_dev=4.739
C3' A 0, -1.837, 2.914, 7.666, 11.141 max_d=11.141 avg_d=2.914 std_dev=4.751
O4' A 0, -1.899, 2.862, 7.622, 11.107 max_d=11.107 avg_d=2.862 std_dev=4.761
O3' B 0, -1.906, 3.354, 8.614, 12.457 max_d=12.457 avg_d=3.354 std_dev=5.260
O3' A 0, -2.007, 3.322, 8.652, 12.548 max_d=12.548 avg_d=3.322 std_dev=5.330
C4' B 0, -1.979, 3.363, 8.704, 12.609 max_d=12.609 avg_d=3.363 std_dev=5.342
C4' A 0, -2.107, 3.286, 8.678, 12.623 max_d=12.623 avg_d=3.286 std_dev=5.392
O5' B 0, -2.338, 3.839, 10.016, 14.534 max_d=14.534 avg_d=3.839 std_dev=6.177
C5' A 0, -2.404, 3.955, 10.313, 14.963 max_d=14.963 avg_d=3.955 std_dev=6.359
C5' B 0, -2.400, 3.989, 10.377, 15.048 max_d=15.048 avg_d=3.989 std_dev=6.388
OP2 B 0, -2.355, 4.034, 10.423, 15.094 max_d=15.094 avg_d=4.034 std_dev=6.389
O5' A 0, -2.440, 4.082, 10.604, 15.373 max_d=15.373 avg_d=4.082 std_dev=6.522
P B 0, -2.613, 4.348, 11.308, 16.399 max_d=16.399 avg_d=4.348 std_dev=6.961
P A 0, -3.015, 4.739, 12.493, 18.165 max_d=18.165 avg_d=4.739 std_dev=7.754
OP2 A 0, -3.108, 4.861, 12.830, 18.659 max_d=18.659 avg_d=4.861 std_dev=7.969
OP1 B 0, -2.999, 5.066, 13.131, 19.027 max_d=19.027 avg_d=5.066 std_dev=8.065
OP1 A 0, -3.200, 5.046, 13.293, 19.326 max_d=19.326 avg_d=5.046 std_dev=8.246

Atoms distances (summary)

atom dist matrix

Atoms distances Chain-A - Chain-A

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.03 0.01 0.00 0.01 0.01 0.01 0.01 0.01 0.01 0.26 0.21 0.37 0.21
C2 0.00 0.00 0.04 0.02 0.00 0.01 0.01 0.04 0.01 0.00 0.00 0.00 0.05 0.03 0.00 0.01 0.51 0.23 0.95 0.61
C2' 0.00 0.04 0.00 0.00 0.01 0.01 0.01 0.02 0.02 0.01 0.03 0.06 0.00 0.01 0.01 0.00 0.33 0.22 0.30 0.19
C3' 0.00 0.02 0.00 0.00 0.03 0.01 0.06 0.02 0.06 0.02 0.02 0.04 0.02 0.01 0.04 0.00 0.38 0.09 0.18 0.22
C4 0.01 0.00 0.01 0.03 0.00 0.03 0.00 0.08 0.00 0.01 0.00 0.01 0.03 0.04 0.00 0.03 0.76 0.77 1.53 1.11
C4' 0.00 0.01 0.01 0.01 0.03 0.00 0.04 0.01 0.03 0.01 0.02 0.01 0.02 0.01 0.03 0.00 0.02 0.30 0.19 0.12
C5 0.01 0.01 0.01 0.06 0.00 0.04 0.00 0.08 0.00 0.00 0.01 0.01 0.01 0.07 0.00 0.03 0.81 0.87 1.53 1.18
C5' 0.03 0.04 0.02 0.02 0.08 0.01 0.08 0.00 0.07 0.05 0.06 0.03 0.01 0.01 0.08 0.02 0.01 0.13 0.29 0.02
C6 0.01 0.01 0.02 0.06 0.00 0.03 0.00 0.07 0.00 0.00 0.00 0.01 0.01 0.06 0.00 0.04 0.72 0.62 1.16 0.93
N1 0.00 0.00 0.01 0.02 0.01 0.01 0.00 0.05 0.00 0.00 0.01 0.01 0.02 0.02 0.01 0.01 0.52 0.26 0.85 0.60
N3 0.01 0.00 0.03 0.02 0.00 0.02 0.01 0.06 0.00 0.01 0.00 0.00 0.05 0.02 0.00 0.02 0.65 0.48 1.27 0.87
O2 0.01 0.00 0.06 0.04 0.01 0.01 0.01 0.03 0.01 0.01 0.00 0.00 0.08 0.06 0.01 0.02 0.39 0.13 0.76 0.41
O2' 0.01 0.05 0.00 0.02 0.03 0.02 0.01 0.01 0.01 0.02 0.05 0.08 0.00 0.04 0.03 0.00 0.08 0.62 0.07 0.18
O3' 0.01 0.03 0.01 0.01 0.04 0.01 0.07 0.01 0.06 0.02 0.02 0.06 0.04 0.00 0.05 0.01 0.24 0.18 0.14 0.04
O4 0.01 0.00 0.01 0.04 0.00 0.03 0.00 0.08 0.00 0.01 0.00 0.01 0.03 0.05 0.00 0.03 0.80 0.90 1.70 1.22
O4' 0.01 0.01 0.00 0.00 0.03 0.00 0.03 0.02 0.04 0.01 0.02 0.02 0.00 0.01 0.03 0.00 0.06 0.26 0.10 0.06
O5' 0.26 0.51 0.33 0.38 0.76 0.02 0.81 0.01 0.72 0.52 0.65 0.39 0.08 0.24 0.80 0.06 0.00 0.01 0.01 0.00
OP1 0.21 0.23 0.22 0.09 0.77 0.30 0.87 0.13 0.62 0.26 0.48 0.13 0.62 0.18 0.90 0.26 0.01 0.00 0.01 0.00
OP2 0.37 0.95 0.30 0.18 1.53 0.19 1.53 0.29 1.16 0.85 1.27 0.76 0.07 0.14 1.70 0.10 0.01 0.01 0.00 0.01
P 0.21 0.61 0.19 0.22 1.11 0.12 1.18 0.02 0.93 0.60 0.87 0.41 0.18 0.04 1.22 0.06 0.00 0.00 0.01 0.00

Atoms distances Chain-A - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.01 0.50 0.21 0.10 1.19 0.07 0.98 0.09 0.64 0.39 0.96 0.21 0.55 0.29 1.53 0.06 0.30 0.36 0.82 0.56
C2 0.46 0.09 0.73 0.53 1.10 0.45 0.85 0.23 0.39 0.05 0.69 0.44 1.11 0.72 1.59 0.32 0.03 0.17 0.68 0.37
C2' 0.34 0.85 0.14 0.22 1.45 0.23 1.25 0.36 0.94 0.72 1.28 0.59 0.21 0.04 1.73 0.36 0.55 0.59 1.02 0.79
C3' 0.24 0.63 0.08 0.14 1.19 0.16 1.03 0.28 0.76 0.55 0.99 0.39 0.22 0.05 1.45 0.27 0.42 0.48 0.85 0.66
C4 1.18 1.06 1.37 1.15 0.13 1.04 0.11 0.81 0.45 0.89 0.60 1.50 1.59 1.26 0.62 0.98 0.63 0.35 0.06 0.23
C4' 0.13 0.51 0.05 0.03 1.05 0.06 0.90 0.17 0.63 0.43 0.86 0.29 0.31 0.14 1.32 0.17 0.32 0.37 0.76 0.56
C5 0.99 0.83 1.16 0.99 0.14 0.90 0.11 0.70 0.35 0.71 0.43 1.21 1.39 1.10 0.54 0.82 0.54 0.31 0.07 0.19
C5' 0.05 0.29 0.19 0.12 0.81 0.08 0.69 0.07 0.45 0.25 0.60 0.08 0.41 0.27 1.07 0.06 0.17 0.24 0.60 0.41
C6 0.64 0.36 0.83 0.68 0.49 0.61 0.37 0.42 0.06 0.33 0.12 0.73 1.10 0.82 0.90 0.51 0.25 0.09 0.32 0.07
N1 0.37 0.08 0.60 0.45 0.93 0.38 0.73 0.19 0.34 0.04 0.58 0.34 0.93 0.62 1.35 0.27 0.02 0.14 0.60 0.33
N3 0.93 0.61 1.18 0.93 0.66 0.83 0.46 0.57 0.08 0.52 0.13 1.14 1.48 1.09 1.28 0.72 0.33 0.10 0.39 0.07
O2 0.13 0.56 0.44 0.25 1.53 0.20 1.22 0.03 0.76 0.42 1.24 0.14 0.91 0.49 1.93 0.04 0.32 0.40 0.97 0.64
O2' 0.71 1.26 0.54 0.58 1.71 0.55 1.51 0.66 1.24 1.08 1.61 1.09 0.18 0.38 1.93 0.68 0.85 0.84 1.28 1.05
O3' 0.51 0.88 0.36 0.40 1.33 0.41 1.20 0.50 0.96 0.79 1.18 0.69 0.13 0.26 1.54 0.51 0.62 0.66 1.00 0.83
O4 1.52 1.55 1.66 1.44 0.53 1.33 0.47 1.09 0.85 1.31 1.21 1.92 1.83 1.51 0.19 1.29 0.93 0.59 0.23 0.50
O4' 0.06 0.35 0.26 0.17 0.96 0.12 0.79 0.02 0.49 0.27 0.74 0.10 0.55 0.34 1.28 0.01 0.19 0.25 0.68 0.45
O5' 0.35 0.67 0.08 0.13 1.27 0.27 1.15 0.41 0.87 0.64 1.01 0.42 0.20 0.11 1.57 0.44 0.54 0.62 1.02 0.83
OP1 0.16 0.52 0.27 0.22 1.20 0.13 1.06 0.18 0.73 0.47 0.91 0.26 0.56 0.49 1.55 0.23 0.32 0.41 0.88 0.64
OP2 0.75 1.03 0.42 0.53 1.77 0.71 1.71 0.91 1.39 1.07 1.41 0.70 0.13 0.27 2.10 0.89 1.06 1.24 1.64 1.42
P 0.41 0.75 0.11 0.17 1.43 0.33 1.32 0.49 1.01 0.73 1.13 0.47 0.23 0.12 1.76 0.52 0.65 0.76 1.20 0.98

Atoms distances Chain-B - Chain-B

Atom C1'C2C2'C3'C4C4'C5C5'C6N1N3O2O2'O3'O4O4'O5'OP1OP2P
C1' 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.01 0.00 0.01 0.01 0.00 0.01 0.00 0.04 0.02 0.09 0.07
C2 0.00 0.00 0.05 0.03 0.01 0.01 0.02 0.02 0.01 0.01 0.01 0.00 0.06 0.04 0.01 0.01 0.09 0.06 0.09 0.06
C2' 0.00 0.05 0.00 0.00 0.02 0.00 0.06 0.01 0.07 0.01 0.03 0.11 0.00 0.01 0.02 0.00 0.02 0.06 0.09 0.06
C3' 0.00 0.03 0.00 0.00 0.08 0.00 0.13 0.01 0.13 0.04 0.02 0.08 0.01 0.00 0.09 0.00 0.05 0.08 0.07 0.05
C4 0.00 0.01 0.02 0.08 0.00 0.05 0.00 0.09 0.00 0.01 0.00 0.02 0.01 0.09 0.01 0.01 0.19 0.14 0.12 0.09
C4' 0.01 0.01 0.00 0.00 0.05 0.00 0.07 0.01 0.07 0.02 0.01 0.04 0.01 0.01 0.06 0.00 0.01 0.05 0.06 0.05
C5 0.00 0.02 0.06 0.13 0.00 0.07 0.00 0.11 0.00 0.01 0.01 0.02 0.03 0.15 0.01 0.01 0.24 0.16 0.13 0.10
C5' 0.01 0.02 0.01 0.01 0.09 0.01 0.11 0.00 0.10 0.04 0.05 0.02 0.02 0.03 0.11 0.01 0.01 0.04 0.02 0.02
C6 0.00 0.01 0.07 0.13 0.00 0.07 0.00 0.10 0.00 0.01 0.01 0.01 0.04 0.15 0.01 0.01 0.21 0.12 0.08 0.07
N1 0.01 0.01 0.01 0.04 0.01 0.02 0.01 0.04 0.01 0.00 0.01 0.00 0.01 0.04 0.00 0.00 0.11 0.06 0.08 0.06
N3 0.00 0.01 0.03 0.02 0.00 0.01 0.01 0.05 0.01 0.01 0.00 0.02 0.05 0.02 0.00 0.01 0.13 0.09 0.09 0.06
O2 0.01 0.00 0.11 0.08 0.02 0.04 0.02 0.02 0.01 0.00 0.02 0.00 0.11 0.11 0.02 0.02 0.05 0.04 0.10 0.07
O2' 0.01 0.06 0.00 0.01 0.01 0.01 0.03 0.02 0.04 0.01 0.05 0.11 0.00 0.02 0.00 0.00 0.03 0.06 0.08 0.07
O3' 0.00 0.04 0.01 0.00 0.09 0.01 0.15 0.03 0.15 0.04 0.02 0.11 0.02 0.00 0.11 0.01 0.10 0.12 0.08 0.05
O4 0.01 0.01 0.02 0.09 0.01 0.06 0.01 0.11 0.01 0.00 0.00 0.02 0.00 0.11 0.00 0.02 0.21 0.17 0.14 0.12
O4' 0.00 0.01 0.00 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.02 0.00 0.01 0.02 0.00 0.05 0.01 0.08 0.08
O5' 0.04 0.09 0.02 0.05 0.19 0.01 0.24 0.01 0.21 0.11 0.13 0.05 0.03 0.10 0.21 0.05 0.00 0.00 0.01 0.01
OP1 0.02 0.06 0.06 0.08 0.14 0.05 0.16 0.04 0.12 0.06 0.09 0.04 0.06 0.12 0.17 0.01 0.00 0.00 0.00 0.00
OP2 0.09 0.09 0.09 0.07 0.12 0.06 0.13 0.02 0.08 0.08 0.09 0.10 0.08 0.08 0.14 0.08 0.01 0.00 0.00 0.00
P 0.07 0.06 0.06 0.05 0.09 0.05 0.10 0.02 0.07 0.06 0.06 0.07 0.07 0.05 0.12 0.08 0.01 0.00 0.00 0.00