sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J01-A2681-A2767
X
>2J03-A2681-A2767
X
>2UUA-A99-A321
X
>354D-A6-B4
X
>1FJG-A99-A321
X
>2J03-B75-B100
X
>2J01-B75-B100
X
>1N32-A99-A321
X
>3KNI-B74-B99
X
>1D4R-A15-B12
X
</seq>
<hsp>
0 1:0.00990811593437
0 2:0.574766715906
0 3:0.720309238247
0 4:0.449754539459
0 5:0.455599241631
0 6:0.453705919923
0 7:0.484865991599
0 8:0.925396673157
0 9:0.998180735851
1 2:0.572163786703
1 3:0.722532518972
1 4:0.447880073363
1 5:0.453273007109
1 6:0.451264296641
1 7:0.483048123247
1 8:0.927016655177
1 9:1.0
2 3:0.563717358305
2 4:0.213969450224
2 5:0.485244471926
2 6:0.478790521382
2 7:0.207347432845
2 8:0.676530609933
2 9:0.791556159712
3 4:0.433492569947
3 5:0.4574560373
3 6:0.457287794265
3 7:0.444663324176
3 8:0.304918124866
3 9:0.529491625629
4 5:0.309223174127
4 6:0.301254631302
4 7:0.134665438185
4 8:0.600483794443
4 9:0.743203797491
5 6:0.0158042885692
5 7:0.315565882722
5 8:0.591483679449
5 9:0.8028888951
6 7:0.310288896106
6 8:0.593742866956
6 9:0.80069556769
7 8:0.56614281005
7 9:0.69505978116
8 9:0.542209214799
</hsp>