sequences=8
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J03-A1026-A1087
X
>2J01-A1026-A1087
X
>3F1H-A1044-A1157
X
>3F1F-A1044-A1157
X
>1NUV-C8-E8
X
>1NUJ-C8-E8
X
>1NUV-A6-G6
X
>1NUJ-A6-G6
X
</seq>
<hsp>
0 1:0.0446974425498
0 2:0.627807555828
0 3:0.609174404215
0 4:0.966481712859
0 5:0.992097549834
0 6:0.949242610203
0 7:0.946505911561
1 2:0.613789324116
1 3:0.596188113966
1 4:0.975481424581
1 5:0.999997308994
1 6:0.957118418151
1 7:0.952392030278
2 3:0.0426629211622
2 4:0.792469948172
2 5:0.766952533163
2 6:0.843690619908
2 7:0.876384482572
3 4:0.782201576
3 5:0.758149598124
3 6:0.837293170937
3 7:0.871114519886
4 5:0.101575043645
4 6:0.241370996671
4 7:0.341123741795
5 6:0.275298898241
5 7:0.37733220163
6 7:0.113715528952
</hsp>