sequences=11
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2J02-A958-A1195
X
>1M5V-D4-E86
X
>3CC2-02041-02491
X
>1K8A-A1245-A1229
X
>3L3C-P3-P18
X
>3G9C-P137-P75
X
>3CCU-01245-01229
X
>3CPW-01245-01229
X
>1M90-A2041-A2491
X
>3CCJ-02126-02136
X
>3OV7-D21-D9
X
</seq>
<hsp>
0 1:0.529438512735
0 2:0.719185351552
0 3:0.881088784954
0 4:0.409387952757
0 5:0.763760814964
0 6:0.833493589714
0 7:0.824765194336
0 8:0.682708975854
0 9:0.669889065932
0 10:0.513031968591
1 2:0.418592702823
1 3:0.808688627565
1 4:0.508720656617
1 5:0.302708017412
1 6:0.741903664444
1 7:0.680177059844
1 8:0.416486799867
1 9:0.636636744249
1 10:0.253629857775
2 3:0.577347759838
2 4:0.512419235412
2 5:0.537515209442
2 6:0.501542975118
2 7:0.428583165877
2 8:0.0731201059061
2 9:0.468548074939
2 10:0.4528564221
3 4:0.541790273542
3 5:1.0
3 6:0.0994193065548
3 7:0.174420365134
3 8:0.546015956665
3 9:0.304239617905
3 10:0.762679664655
4 5:0.723421505305
4 6:0.482676412102
4 7:0.49389282256
4 8:0.456590992278
4 9:0.378193210458
4 10:0.409179068335
5 6:0.922143590867
5 7:0.851398762577
5 8:0.544846559483
5 9:0.830945410071
5 10:0.372344306791
6 7:0.109334755639
6 8:0.467973025312
6 9:0.255863204123
6 10:0.689566491948
7 8:0.401981262146
7 9:0.250593939301
7 10:0.646162036178
8 9:0.427046943229
8 10:0.424743877746
9 10:0.552545072494
</hsp>