sequences=10
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>2QEX-01120-01144
X
>3U5D-12248-12258
X
>3OL8-O6-N11
X
>2OTL-02311-02061
X
>3F1G-A580-A614
X
>3U5D-11005-1932
X
>1KD1-A360-A265
X
>3CCS-0146-0166
X
>3CD6-01049-01225
X
>1K8A-A146-A166
X
</seq>
<hsp>
0 1:0.360757875034
0 2:0.832725264965
0 3:0.595147356187
0 4:0.637413843737
0 5:0.717915523051
0 6:0.71755107196
0 7:0.992657179096
0 8:0.640054272961
0 9:0.999999491048
1 2:0.64385437559
1 3:0.517681116341
1 4:0.472682148255
1 5:0.463077586956
1 6:0.557045029171
1 7:0.706022506842
1 8:0.444223906356
1 9:0.74993759441
2 3:0.466776188521
2 4:0.326834866165
2 5:0.41432623689
2 6:0.333996993392
2 7:0.607849084369
2 8:0.396526891201
2 9:0.579676092032
3 4:0.412479093366
3 5:0.467198984023
3 6:0.217016282543
3 7:0.642451680137
3 8:0.291917490423
3 9:0.585882584565
4 5:0.493471345781
4 6:0.348795734357
4 7:0.621498267368
4 8:0.284429236161
4 9:0.610805973361
5 6:0.372481349017
5 7:0.491279518354
5 8:0.369482292836
5 9:0.49480191459
6 7:0.502108951979
6 8:0.180039045158
6 9:0.418993043004
7 8:0.46372470236
7 9:0.216072834567
8 9:0.410760618902
</hsp>