sequences=9
<param>
maxmove=0.1
pval=0.1
usescval=false
complexatt=true
cooling=1.0
currcool=1.0
attfactor=10.0
attvalpow=1
repfactor=10.0
repvalpow=1
dampening=1.0
minattract=1.0
cluster2d=false
blastpath=/home/sdh/apps/blast-2.2.17/bin/blastall -p blastp -M PAM70 -F F -e 10000 -b 500 -v 500
formatdbpath=/home/sdh/apps/blast-2.2.17/bin/formatdb
showinfo=true
zoom=1.0
dotsize=0
ovalsize=10
groupsize=4
usefoldchange=false
avgfoldchange=false
colorcutoffs=0.0;0.1;0.2;0.3;0.4;0.5;0.6;0.7;0.8;0.9;
colorarr=(230;230;230):(207;207;207):(184;184;184):(161;161;161):(138;138;138):(115;115;115):(92;92;92):(69;69;69):(46;46;46):(23;23;23):
</param>
<rotmtx>
1.0;0.0;0.0;
0.0;1.0;0.0;
0.0;0.0;1.0;
</rotmtx>
<seq>
>1YYK-F4-E7
X
>3CCJ-01570-01541
X
>3OI0-A5-A19
X
>1N32-A174-A193
X
>3HHN-E132-E14
X
>1VQ5-02126-02136
X
>1VQK-01570-01541
X
>1VQM-02126-02136
X
>3KNK-A2393-A2367
X
</seq>
<hsp>
0 1:0.707495651288
0 2:0.68475243634
0 3:0.3543647113
0 4:0.441977636171
0 5:0.526949981853
0 6:0.332121610235
0 7:0.643963329039
0 8:0.831644155047
1 2:0.804066795499
1 3:0.813044162403
1 4:0.71903520598
1 5:0.67460440593
1 6:0.489479685212
1 7:0.507957135645
1 8:0.890117253271
2 3:0.880523875648
2 4:0.35437551305
2 5:0.460333578772
2 6:0.495954698892
2 7:0.537498430881
2 8:1.0
3 4:0.633542840621
3 5:0.600264703217
3 6:0.487494899012
3 7:0.672693317309
3 8:0.606008860546
4 5:0.383936676108
4 6:0.325211435134
4 7:0.508499457116
4 8:0.811533543278
5 6:0.389878440351
5 7:0.291419334828
5 8:0.638213540838
6 7:0.377244669161
6 8:0.737096710214
7 8:0.606108770391
</hsp>